Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J08
(481 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 30 0.16
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 29 0.48
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 28 0.84
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 27 1.5
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 26 2.6
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 2.6
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 3.4
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy... 26 3.4
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm... 25 5.9
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 7.8
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.8
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 25 7.8
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 25 7.8
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 30.3 bits (65), Expect = 0.16
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 145 PEPRSPLALEISSEIVTSINGHRDLEIKLFSTSPPATNSDRRSFFDEKSES 297
P PR L ++SE + S+ HRD K+F A NS+ + + E+
Sbjct: 760 PLPREALETNLASENIESVKKHRDGLSKIFIRPESADNSNNTNVSFQTDET 810
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 0.48
Identities = 20/85 (23%), Positives = 36/85 (42%)
Frame = +1
Query: 121 PPTRRASSPEPRSPLALEISSEIVTSINGHRDLEIKLFSTSPPATNSDRRSFFDEKSESA 300
PPT +S P +++ V H + + PP T+++ SF +ES+
Sbjct: 110 PPTTHVNSTTTVVPPTTHVNTTTVVPPTTH----VNTTTVVPPTTHANTTSFVPTTTESS 165
Query: 301 VNRCTITSYDTVNSAIVCNNVGSSV 375
++ T Y+T + N +SV
Sbjct: 166 IHPITTGFYNTTFTTGYFNTSVTSV 190
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 27.9 bits (59), Expect = 0.84
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +1
Query: 76 NNSETYSAPNLYSLFPPTRRASSPEPRSPLALEISSEIVTSINGHRDLEIKLFSTSPPAT 255
N SE + P L PP ++ L LE+ ++ N + L +K SP +T
Sbjct: 190 NFSELFK-PKPVKLAPPKKKTPKVCVPGRLTLEVDTDYAIIFNSKKSLPLKRNVVSPIST 248
Query: 256 NSDRR 270
++ +R
Sbjct: 249 HTKKR 253
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 27.1 bits (57), Expect = 1.5
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = -3
Query: 227 LISKSRCPLIDVTISDDISNARGERGSGELA--LRVGGNKEYKLGAE*VSLLFASLRSGT 54
LIS + CP I + SDD N +G + A +R G++ ++ ++ +L S
Sbjct: 43 LISDTYCPHIFIMASDDTENFMKRKGFDDFASFIRPFGDRIFQSSTNNSAISKETLDSRI 102
Query: 53 RDDGSLQLR---LKAVSAPR 3
D+ +R ++AV PR
Sbjct: 103 FDNDHDSIRFVPMEAVQVPR 122
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 26.2 bits (55), Expect = 2.6
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 127 TRRASSPEPRSPLALEISSEI-VTSINGHRDLEIKLFSTSPPATNSDRRSFFDEKSES 297
TR AS + +I +E + + GH+D KL +PP+ N+ + D +S
Sbjct: 117 TRLASGSMDTDIIVWDIVAETGLFRLRGHKDQITKLLFITPPSKNTAEETVVDTDIDS 174
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 2.6
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 43 PSSRVPERREANNS--ETYSAPNLYSLFPPTRRASSPEPRSPLA 168
P +P +++S T S+ +LYSL+ + SPEP PL+
Sbjct: 172 PRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLS 215
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 3.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 73 ANNSETYSAPNLYSLFPPTRRASSPEPRS 159
AN S TY N + +PPT+ ++ P P+S
Sbjct: 106 ANQSYTYG--NNFGSYPPTQPSTQPLPQS 132
>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 256 NSDRRSFFDEKSESAVNRCTITSYDTVNSAIVCNNVGSSVKMDGKK 393
N+D+ D++ + + CT T V + + C N G S + G K
Sbjct: 102 NADKAILDDDQFHTDPSGCTATVVLRVGNKLYCANAGDSRTVLGSK 147
>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 25.0 bits (52), Expect = 5.9
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +1
Query: 139 SSPEPRSPLALEISSEIVTSINGHRDLEIKLFSTSPPATNSDRRSFFDEKSESAVNRCTI 318
S + R L + S+ +V +++ +LFS PP TN + + + AV T
Sbjct: 142 SEDQMRKTLLFQFSTSMVPNLSATAS---QLFSEQPPKTNEPTETETEIDANKAVEEKTK 198
Query: 319 TSY 327
+Y
Sbjct: 199 MNY 201
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 24.6 bits (51), Expect = 7.8
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 40 DPS-SRVPERREANNSETYSAPNLYSLFPPTRRASSPEPRSPLALEISSE 186
DPS VP++R +S S P + P R ++ + +SP + SS+
Sbjct: 270 DPSLESVPQKRLNASSNVSSNPAKKTRVSPRRSTAASKKKSPSSKRASSD 319
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 253 TNSDRRSFFDEKSESAVNRCTITSYDTVNSAIVCNN 360
+ +D F + K + + T T+Y +NS IV NN
Sbjct: 19 SKADEVIFANYKHTNDFFKITATTYALINSVIVSNN 54
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 24.6 bits (51), Expect = 7.8
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Frame = +1
Query: 13 DTALRRSWSDPSSRVPERREANNSETYSAPNLYSLFPPTRRASSPEPRSP-LALEISSEI 189
DT+L R S S P+RR+ + S +A Y P++++S P P + E+ +
Sbjct: 215 DTSLSRRSSRGRSSAPKRRKDSGSSKTTA--TYIPHNPSKKSSQHLPLLPDASFELERSV 272
Query: 190 VTSINGHRDL---EIKLFSTSPP 249
S + S+SPP
Sbjct: 273 SRSYQSPASTPRSSVSSVSSSPP 295
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 24.6 bits (51), Expect = 7.8
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 38 VTRHLVYQSEERQITVKL--ILHLICIPYSRQPEEPVHQSLVLLL 166
+T H V EERQI+V++ ++ + Y PE+ + L L
Sbjct: 294 ITSHNVLSDEERQISVQVQNLILKLAKDYDMSPEDFLMDDFTLSL 338
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,399
Number of Sequences: 5004
Number of extensions: 41158
Number of successful extensions: 164
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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