Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J08
(481 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0417 - 16904476-16904662,16904846-16905029,16905150-169058... 31 0.37
03_03_0254 + 15884149-15884295,15884765-15884803,15884958-158851... 30 1.1
02_05_1079 + 33950290-33950337,33950418-33952586,33952690-339527... 30 1.1
03_05_0822 - 27963849-27964544,27965043-27965091,27965372-279654... 29 1.5
09_03_0085 - 12209697-12210457,12212823-12213255 29 2.6
10_08_0738 - 20212220-20212282,20212387-20212593,20212690-202128... 28 3.4
11_02_0038 - 7631462-7634428,7635975-7636250 28 4.5
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 28 4.5
05_04_0274 - 19636163-19636280,19636359-19636423,19636485-196366... 28 4.5
05_03_0177 - 9245131-9245793 28 4.5
02_04_0577 - 24011542-24011906,24012285-24012385,24013029-240132... 28 4.5
11_04_0032 + 12545208-12545954 27 6.0
06_01_0571 - 4038319-4040877,4040962-4041012 27 6.0
03_06_0069 - 31449319-31450368 27 6.0
10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334 27 7.9
09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645 27 7.9
05_04_0154 - 18549806-18550161,18550271-18550907 27 7.9
02_05_0073 - 25602268-25603182,25603273-25604190 27 7.9
01_06_0822 - 32233395-32233982 27 7.9
>08_02_0417 -
16904476-16904662,16904846-16905029,16905150-16905897,
16906003-16906227,16906318-16906485,16906803-16907453
Length = 720
Score = 31.5 bits (68), Expect = 0.37
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1
Query: 124 PTRRASSPEPRSPLALEISSEIVTSINGHRDLEIKLFSTSPPATNS 261
PT R SP P SP+A + S+ +V S+ R S+ P AT+S
Sbjct: 550 PTARTPSPAPPSPIATKTSTSVVLSLAAVRATS-PATSSPPRATSS 594
>03_03_0254 +
15884149-15884295,15884765-15884803,15884958-15885136,
15887175-15887310,15887769-15887865,15888448-15888534,
15888621-15888721,15888905-15888939,15889520-15889577,
15889650-15889724,15890048-15890135,15890155-15890308,
15890395-15890638
Length = 479
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 124 PTRRASSPEPRSPLALEISSEIVTSING 207
PT R + PEP S + +E+SSE+++ G
Sbjct: 406 PTARKNQPEPDSSVLVEMSSEMISEDGG 433
>02_05_1079 +
33950290-33950337,33950418-33952586,33952690-33952780,
33952955-33953435,33954249-33954345
Length = 961
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +1
Query: 10 ADTALRRSWSDPSSRVPERREANNSETYSAPNLYSLFPPTRRASSPEPRSPLALEISSEI 189
AD LR S +VPE+ + + E + L LF P R S+ R L L ++ ++
Sbjct: 453 ADRGLR-SLGVSYQKVPEKSKESEGEPWQFVGLLPLFDPPRHDSAETIRRALHLGVNVKM 511
Query: 190 VT 195
+T
Sbjct: 512 IT 513
>03_05_0822 -
27963849-27964544,27965043-27965091,27965372-27965480,
27965979-27966006,27966086-27966276,27966418-27966532,
27966955-27967206
Length = 479
Score = 29.5 bits (63), Expect = 1.5
Identities = 25/90 (27%), Positives = 38/90 (42%)
Frame = +1
Query: 1 ARGADTALRRSWSDPSSRVPERREANNSETYSAPNLYSLFPPTRRASSPEPRSPLALEIS 180
A+GA S SD + P R + + P L P+RR S P P+ P + S
Sbjct: 244 AKGAVMGWLNSASDDAWNEPNPRPTT-PQLHKLPVQSPLANPSRRHSFPSPKPPQSFSSS 302
Query: 181 SEIVTSINGHRDLEIKLFSTSPPATNSDRR 270
S + + +FS +P AT S ++
Sbjct: 303 SAAAANSD-------FIFSETPMATKSQKK 325
>09_03_0085 - 12209697-12210457,12212823-12213255
Length = 397
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 161 GERGSGELALRVGGNKEYKLGAE 93
G RG G LRVG +EY++G E
Sbjct: 7 GGRGGGRPPLRVGRTQEYRMGRE 29
>10_08_0738 -
20212220-20212282,20212387-20212593,20212690-20212819,
20212919-20213089,20213311-20213433,20213517-20213618,
20214123-20214880
Length = 517
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +2
Query: 113 PYSRQPEEPVHQSLVLLLRWKYRQRSLRRSMGIATWKLNYFQPRLRQRTP 262
P RQP P L +RQ ++ W + + RL QRTP
Sbjct: 19 PPRRQPHPPPPPPPPLPRHALHRQHEREGEATMSVWSVGFINARLSQRTP 68
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 380 WMGKSVK-NFPMWDALVSFRYRQTYAQHL 463
W+ K ++ FP+W +L+ RY+Q + + L
Sbjct: 1047 WLSKDLQMEFPLWLSLLKQRYQQLHGEEL 1075
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 46 SSRVPERREANNSETYSAPNLYSLFPPTRRASSPEPRSPLA 168
S+ +P + N S+ N++S FPP R + P +P+A
Sbjct: 847 STVMPVQVNTTNRGPDSSRNIFSAFPPAVRENQSIPSAPVA 887
>05_04_0274 -
19636163-19636280,19636359-19636423,19636485-19636637,
19636738-19637043,19637137-19637314,19637452-19637687,
19637835-19638032,19638171-19638293,19638729-19639013,
19639186-19639326,19639799-19640188,19640465-19640647,
19640934-19641020
Length = 820
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 145 PEPRSPLALEISSEIVTSINGHRDLEIKLFSTSPPATNSDRRSFFDEKSESAVNR 309
PE R PLALE+ + ++ + + T+ P TN S D + S + R
Sbjct: 557 PEDRQPLALEVWQSVRKQLDPGEKITV---LTNGPLTNMANISLSDRDASSVIER 608
>05_03_0177 - 9245131-9245793
Length = 220
Score = 27.9 bits (59), Expect = 4.5
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +1
Query: 124 PTRRASSPEPRSPLALEISSEIVTSINGHRDLEI-KLFSTSPPATNSDRRSFFDEKSESA 300
PT ++ P P +P A SS + GH+ + + +L + PPA R F D SE
Sbjct: 18 PTGSSAGPPP-APAA-SASSPLPRQAQGHKVVSLAQLHNKRPPAATGLRLDFDDGGSEH- 74
Query: 301 VNRCTITSYDTVNS 342
V+ T +S ++ S
Sbjct: 75 VSMTTTSSASSILS 88
>02_04_0577 -
24011542-24011906,24012285-24012385,24013029-24013287,
24014176-24014264,24015331-24015419
Length = 300
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 25 RRSWSDPSSRVPERREANNSETYSAPNLYSLFPPTRRAS 141
RRS+S P R P+RR + S + YS PP RA+
Sbjct: 145 RRSYS-PRDRSPKRRSYSRSPPPARARSYSRSPPPPRAA 182
>11_04_0032 + 12545208-12545954
Length = 248
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 310 CTITSYDTVNSAIVCNNVGSSVKMDGKKCEEFSD 411
CT+ + + +CNN G+ K++G + + F D
Sbjct: 189 CTVIDASSHGAVTLCNNEGNIFKVNGHRLKVFLD 222
>06_01_0571 - 4038319-4040877,4040962-4041012
Length = 869
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +1
Query: 10 ADTALRRSWSDPSSRVPERREANNSETYSAPNLYSLFPPTRRASSPEPRSPLALEISSEI 189
AD LR S +VPE+ + + + + L LF P R S+ R L L ++ ++
Sbjct: 454 ADRGLR-SLGVSYQQVPEKSKDSGGDPWQFIGLLPLFDPPRHDSAETIRRALHLGVNVKM 512
Query: 190 VT 195
+T
Sbjct: 513 IT 514
>03_06_0069 - 31449319-31450368
Length = 349
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +1
Query: 139 SSPEPRSPLALEISSEIVTSINGHRDLEIKLFSTSP-PATNSDRRSFFDEKSESAVNRC- 312
S+P P +P + S++ GH D+ L P A++S S++ ++ + V+
Sbjct: 213 SAPRPVTPPPPHMDSQLGMGTLGHHDVLSSLGLKLPSSASSSPAASYYSDQLHAVVSNAG 272
Query: 313 -TITSYDTVNSAIVCNNVGSSV 375
YD +++ C +S+
Sbjct: 273 RPQAPYDVATASLPCTTAVTSL 294
>10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334
Length = 664
Score = 27.1 bits (57), Expect = 7.9
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Frame = +1
Query: 208 HRDLEIKLFSTSP-PATNSDRRSFFDEKSE---SAVNRCTITSYDTVNSAIVCNNVGSSV 375
H +++ L + PA N D R F+ SA N + IV NN+GSS
Sbjct: 574 HEVIDVTLLAGKQLPAPNEDVRKVFELAVACLLSAENGLCMLGVAKELMQIVRNNIGSSS 633
Query: 376 KMDGKKCEEFSDVGCARQLSL 438
K++ E FS + +S+
Sbjct: 634 KIEISLEETFSSSSLLQMISM 654
>09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645
Length = 375
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 238 TSPPATNSDRRSFFDEKSESAVNRCTITSYDTVNSAIVCNNVGSSVKMDG 387
TSP TN+D++ +D++ +CT + N + N + ++ M G
Sbjct: 217 TSPDITNNDQKDQWDDEHPVLKQKCTPAGTNLKNPEVDQNGLIQTLAMCG 266
>05_04_0154 - 18549806-18550161,18550271-18550907
Length = 330
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 1 ARGAD--TALRRSWSDPSSRVPERREANNSETYSAPNLYSLFPPTRRASSPEPR 156
+RG D T +R +W P++R ER++ + S+P S FP AS+ +PR
Sbjct: 131 SRGFDCPTHVRSTWV-PAARRRERQQLAGAA--SSPPTSSAFPAATTASAKKPR 181
>02_05_0073 - 25602268-25603182,25603273-25604190
Length = 610
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 37 SDPSSRVPERREANNSETYSAPNLYSLFPPT-RRASSPEPRSPLALEISSEIVTSING 207
+ P S P R A +E + + P+ R+SSP RSP+A EI + + NG
Sbjct: 245 ASPRSSSPARMVAAGNENAGGGQMTAAQTPSLSRSSSPYRRSPMA-EIDENSLRNNNG 301
>01_06_0822 - 32233395-32233982
Length = 195
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 323 LVIVHLFTALSLFSSKKERRSEFVAGGEVENNLISKSRC 207
L+I+ LSL S + R V GG V N + ++RC
Sbjct: 5 LIILLFLPLLSLLSYRAAHRGGEVGGGVVMGNGLEEARC 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,182,057
Number of Sequences: 37544
Number of extensions: 273165
Number of successful extensions: 950
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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