Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J08
(481 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical ... 36 0.020
U40412-1|AAA81395.1| 570|Caenorhabditis elegans Temporarily ass... 31 0.33
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 31 0.57
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 31 0.57
AC024751-8|AAK21510.3| 369|Caenorhabditis elegans Hypothetical ... 30 0.76
AF063007-2|AAC16433.1| 583|Caenorhabditis elegans Hypothetical ... 30 1.00
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe... 29 1.3
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe... 29 1.3
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein. 29 1.3
Z78018-2|CAB01447.1| 434|Caenorhabditis elegans Hypothetical pr... 29 2.3
U53338-1|AAA96189.2| 152|Caenorhabditis elegans Hypothetical pr... 29 2.3
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 28 3.1
U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying defe... 28 4.0
Z72502-4|CAA96589.1| 750|Caenorhabditis elegans Hypothetical pr... 27 5.3
U97005-6|AAB52279.1| 242|Caenorhabditis elegans Hypothetical pr... 27 5.3
U58746-7|AAB00628.2| 461|Caenorhabditis elegans Hypothetical pr... 27 5.3
U40940-5|AAA81706.2| 465|Caenorhabditis elegans Hypothetical pr... 27 5.3
U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 27 7.0
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 27 7.0
U67949-2|AAB07560.2| 368|Caenorhabditis elegans Hypothetical pr... 27 7.0
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr... 27 7.0
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 27 7.0
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 27 7.0
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 7.0
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 7.0
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 7.0
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 27 7.0
AF039046-1|AAB94210.1| 458|Caenorhabditis elegans F-box a prote... 27 7.0
L14433-7|AAA27972.1| 469|Caenorhabditis elegans Hypothetical pr... 27 9.3
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical... 27 9.3
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 27 9.3
>AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical
protein Y56A3A.6 protein.
Length = 798
Score = 35.5 bits (78), Expect = 0.020
Identities = 23/71 (32%), Positives = 35/71 (49%)
Frame = +1
Query: 43 PSSRVPERREANNSETYSAPNLYSLFPPTRRASSPEPRSPLALEISSEIVTSINGHRDLE 222
P+S P+RR NN+E S + P ++ +SP P P A +S++ N +
Sbjct: 598 PTSPTPQRRPLNNTEVPSPVTYRKISAPVQKVTSPAP--PAARSVSTDQPPPANRRSQVG 655
Query: 223 IKLFSTSPPAT 255
I L +TS AT
Sbjct: 656 I-LSATSSKAT 665
>U40412-1|AAA81395.1| 570|Caenorhabditis elegans Temporarily
assigned gene nameprotein 257 protein.
Length = 570
Score = 31.5 bits (68), Expect = 0.33
Identities = 25/82 (30%), Positives = 38/82 (46%)
Frame = +1
Query: 55 VPERREANNSETYSAPNLYSLFPPTRRASSPEPRSPLALEISSEIVTSINGHRDLEIKLF 234
VP+ +N + +AP PPT +SP ++S +S N + + F
Sbjct: 394 VPKTHRSNQQQEKNAPPR----PPT--TASPRAAPVATFKVSWPTDSSQNDSAN-DWGDF 446
Query: 235 STSPPATNSDRRSFFDEKSESA 300
S +PPA N ++ FD SESA
Sbjct: 447 SQAPPAVNVSKKDVFDPFSESA 468
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 30.7 bits (66), Expect = 0.57
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +1
Query: 160 PLALEISSEIVTSINGHRDLEIKLFSTS-PPATNSDRRSFFDEKSESAVNRCTIT-SYDT 333
P+ + + VT+ N H D E + + PPAT ++ D +SES +R T +YD
Sbjct: 1516 PMEEAAAEKTVTAENDHVDAEKTVIAVEIPPATEAEEDEVVDVQSESRRSRRRKTPNYDD 1575
Query: 334 VNSAIVCNNVGSSVKMDGKKCEE 402
S + K+ K E+
Sbjct: 1576 EESVDADGKIWKKPKIVNKSPEK 1598
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 30.7 bits (66), Expect = 0.57
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +1
Query: 160 PLALEISSEIVTSINGHRDLEIKLFSTS-PPATNSDRRSFFDEKSESAVNRCTIT-SYDT 333
P+ + + VT+ N H D E + + PPAT ++ D +SES +R T +YD
Sbjct: 1516 PMEEAAAEKTVTAENDHVDAEKTVIAVEIPPATEAEEDEVVDVQSESRRSRRRKTPNYDD 1575
Query: 334 VNSAIVCNNVGSSVKMDGKKCEE 402
S + K+ K E+
Sbjct: 1576 EESVDADGKIWKKPKIVNKSPEK 1598
>AC024751-8|AAK21510.3| 369|Caenorhabditis elegans Hypothetical
protein Y18H1A.7 protein.
Length = 369
Score = 30.3 bits (65), Expect = 0.76
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 46 SSRVPERREANNSETYSAPNLYSLFPPTRRA-SSPEPRSPLALEISSEIVTS 198
S ++PE AN++E AP R A SSP P+SP E SEI S
Sbjct: 110 SEKLPET--ANSTENQDAPATEQTILNNRAAGSSPSPKSPRFAEKPSEIAKS 159
>AF063007-2|AAC16433.1| 583|Caenorhabditis elegans Hypothetical
protein R119.7 protein.
Length = 583
Score = 29.9 bits (64), Expect = 1.00
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 3/130 (2%)
Frame = +1
Query: 64 RREANNSETYSAPNLYSLFPPTRRASSPEPRSPLALEISSEIVTSINGHRDLEIKLFSTS 243
R N + + P +S R S + +A S I + E +F T
Sbjct: 408 RINPTNIDHHDEPAPWSPLKRLRAESGSLSTAQVASPEFSPIKPKTMEFHETEDDVFETG 467
Query: 244 PPATNSDRRSFFDEKSESAVNRCTIT---SYDTVNSAIVCNNVGSSVKMDGKKCEEFSDV 414
PP T + E +E+A +C +YD +N++ + +N S+ KK F +
Sbjct: 468 PPPT------YLSEGNENAEKKCVEQPKINYDDINNSRLPSNSHSAAPNSEKKHFVFPEY 521
Query: 415 GCARQLSLPA 444
R S+P+
Sbjct: 522 PMCRHSSVPS 531
>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying
defective protein 27,isoform b protein.
Length = 1124
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = +1
Query: 25 RRSWSDPSSRVPERREANNSETYSAPNLYSLFPPTRRASSPEPRSPLALEISSEIVTSIN 204
RR S P+RR + APNL + PT++ + R+P + + ++ ++
Sbjct: 506 RRRTPSSMSETPDRRSPSTVSN-GAPNLTAEETPTKKLNGSVKRAP-KRPLHNGVINNVE 563
Query: 205 GHRDLEIKLFSTSPPAT 255
E T+PP T
Sbjct: 564 KSNSSEEPASPTTPPPT 580
>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying
defective protein 27,isoform a protein.
Length = 1129
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = +1
Query: 25 RRSWSDPSSRVPERREANNSETYSAPNLYSLFPPTRRASSPEPRSPLALEISSEIVTSIN 204
RR S P+RR + APNL + PT++ + R+P + + ++ ++
Sbjct: 509 RRRTPSSMSETPDRRSPSTVSN-GAPNLTAEETPTKKLNGSVKRAP-KRPLHNGVINNVE 566
Query: 205 GHRDLEIKLFSTSPPAT 255
E T+PP T
Sbjct: 567 KSNSSEEPASPTTPPPT 583
>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
Length = 1129
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = +1
Query: 25 RRSWSDPSSRVPERREANNSETYSAPNLYSLFPPTRRASSPEPRSPLALEISSEIVTSIN 204
RR S P+RR + APNL + PT++ + R+P + + ++ ++
Sbjct: 509 RRRTPSSMSETPDRRSPSTVSN-GAPNLTAEETPTKKLNGSVKRAP-KRPLHNGVINNVE 566
Query: 205 GHRDLEIKLFSTSPPAT 255
E T+PP T
Sbjct: 567 KSNSSEEPASPTTPPPT 583
>Z78018-2|CAB01447.1| 434|Caenorhabditis elegans Hypothetical
protein W07G4.2 protein.
Length = 434
Score = 28.7 bits (61), Expect = 2.3
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +1
Query: 190 VTSINGHRDLEIKLFSTSPPATNSDRRSFFDEKSESAVNRCTITSYDTVNSAIVCN 357
+TSI HR++ F T+P +S S S N T+TSY+ V ++++CN
Sbjct: 19 ITSITKHRNMH---FVTTP--VSSLLLSALLNDRNSTTN--TLTSYENVQNSVICN 67
>U53338-1|AAA96189.2| 152|Caenorhabditis elegans Hypothetical
protein C05E11.6 protein.
Length = 152
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 28 RSWSDPSSRVPERREANNSETY-SAPNLYSLFPPTRRASSPEPRSPLAL 171
RS P++RV R++ ++T+ S ++S P +R PEP +P+ L
Sbjct: 87 RSHFAPNTRVECRKDCFQNDTFQSCMKIFSRVP-SRPVQQPEPTAPIPL 134
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.7 bits (61), Expect = 2.3
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = +1
Query: 43 PSSRVPERREANN-SETYSAPNLYSLFPPTRRASSPEPRSPLALEISSEIVTSINGHRDL 219
P SR+P + +E +P PP SS P P + I+G +
Sbjct: 476 PPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPPPPALEQEISGPPTV 535
Query: 220 EIKLFSTSPPATNSDRRSFFDE 285
+ T+ P +NSDRRS D+
Sbjct: 536 RL----TAVPESNSDRRSLMDQ 553
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 28.3 bits (60), Expect = 3.1
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = +1
Query: 43 PSSRVPERREANN-SETYSAPNLYSLFPPTRRASS--PEPRSPLALEISSEIVTSINGHR 213
P SR+P + +E +P PP SS P P P ALE I+G
Sbjct: 469 PPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPALE------QEISGPP 522
Query: 214 DLEIKLFSTSPPATNSDRRSFFDE 285
+ + T+ P +NSDRRS D+
Sbjct: 523 TVRL----TAVPESNSDRRSLMDQ 542
>U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying
defective protein 27,isoform c protein.
Length = 612
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +1
Query: 49 SRVPERREANNSETYSAPNLYSLFPPTRRASSPEPRSPLALEISSEIVTSINGHRDLEIK 228
S P+RR + APNL + PT++ + R+P + + ++ ++ E
Sbjct: 2 SETPDRRSPSTVSN-GAPNLTAEETPTKKLNGSVKRAP-KRPLHNGVINNVEKSNSSEEP 59
Query: 229 LFSTSPPAT 255
T+PP T
Sbjct: 60 ASPTTPPPT 68
>Z72502-4|CAA96589.1| 750|Caenorhabditis elegans Hypothetical
protein C08B6.7 protein.
Length = 750
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 247 PATNSDRRSFFDEKSESAVNRCTITSYDTVNSAIVCNNV 363
P+T++D S + S +RC++ S++T+N A N+V
Sbjct: 434 PSTSADLNSGV-MNATSTFSRCSLASFNTINGAPAGNSV 471
>U97005-6|AAB52279.1| 242|Caenorhabditis elegans Hypothetical
protein F19F10.1 protein.
Length = 242
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/56 (30%), Positives = 22/56 (39%)
Frame = +1
Query: 13 DTALRRSWSDPSSRVPERREANNSETYSAPNLYSLFPPTRRASSPEPRSPLALEIS 180
D +++ P R P +N + N PT ASS EP SP E S
Sbjct: 134 DFSMKTELETPVKRTPLFNISNLISDFEVSNNSLTSSPTSSASSVEPSSPTTTESS 189
>U58746-7|AAB00628.2| 461|Caenorhabditis elegans Hypothetical
protein R05G6.10 protein.
Length = 461
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 187 IVTSINGHRDLEIKLFSTSPPATNSDR 267
++TS++G +D + F PP ++S+R
Sbjct: 425 LITSVSGEKDSMLMSFECEPPESSSER 451
>U40940-5|AAA81706.2| 465|Caenorhabditis elegans Hypothetical
protein T03G6.3 protein.
Length = 465
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 28 RSWSDPSSRVPERREANNSETYSAPNLYSLFP 123
R++ D +VPE+R AN + + NL +FP
Sbjct: 143 RAFYDMVVQVPEKRWANLDDQHQTDNLRDIFP 174
>U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical
protein C56E6.5 protein.
Length = 595
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -3
Query: 416 PTSENSSHFFPSILTLEPTLLQTIALF 336
PTS SS FF +LT LLQTI +F
Sbjct: 363 PTSLPSSLFFWKLLTFLYLLLQTIVIF 389
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 52 RVPERREANNSETYSAPNLYSLFPPTRRASSPEPRSPLALEISSEIVTS 198
R P ++ S +L P+RR+SS PRSP + S IV S
Sbjct: 511 RSPTDVSHDSGRPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRS 559
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 22 LRRSWSDPSSRVPERREANNSETYSAPNLYSLFPPTRRASS 144
LRR S P P RR + + E S PPTRR S+
Sbjct: 477 LRRRQSSPMVASPRRRRSPSPERQRKRRSPSDSPPTRRLST 517
>U67949-2|AAB07560.2| 368|Caenorhabditis elegans Hypothetical
protein F55A4.2 protein.
Length = 368
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 229 LFSTSPPATNSDRRSFFDEKSESAVNRCTITSYDTV 336
L +T PP N FF + S++ +RCT+ S D +
Sbjct: 141 LSNTIPPCKNF---GFFAQHSDNVTDRCTVWSDDVI 173
>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical protein
F41H10.3a protein.
Length = 1140
Score = 27.1 bits (57), Expect = 7.0
Identities = 23/108 (21%), Positives = 44/108 (40%)
Frame = +1
Query: 94 SAPNLYSLFPPTRRASSPEPRSPLALEISSEIVTSINGHRDLEIKLFSTSPPATNSDRRS 273
S+P L S P T +P P +P + S++ ++ D I ST+ T D
Sbjct: 1027 SSPLLSSQAPMTTLMPTPPPPAPAPAQASAQSTSATPALVD-TISAGSTTTETTTGD--- 1082
Query: 274 FFDEKSESAVNRCTITSYDTVNSAIVCNNVGSSVKMDGKKCEEFSDVG 417
+S + T T + + +G +++ + ++ +E D G
Sbjct: 1083 --SNQSNPPLRTYTSHIRKTPGTTLTPEEIGDAIRTESQRFQEDGDEG 1128
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 328 DTVNSAIVCNNVGSSVKMDGKKCEEFSDVGCARQLSLPANLRATFV 465
DTV+ ++ C K GK CE+ ++ C + P +L A V
Sbjct: 1560 DTVDGSVECKECMGGYKKSGKVCEDINE--CVAE-KAPCSLNANCV 1602
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 22 LRRSWSDPSSRVPERREANNSETYSAPNLYSLFPPTRRASS 144
LRR S P P RR + + E S PPTRR S+
Sbjct: 477 LRRRQSSPMVASPRRRRSPSPERQRKRRSPSDSPPTRRLST 517
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.1 bits (57), Expect = 7.0
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Frame = +1
Query: 130 RRASSPEPRSPLALEISSEIVTSINGHRDLEIKLFSTSPPATNSDRRSFFDE--KSESAV 303
+ PE S +ALE+SS+I +S LEI ST P + + E +E+ V
Sbjct: 9074 KTTDEPELDSEIALEVSSDITSS------LEITTESTIPDTAPESQETLNVEIAVTETTV 9127
Query: 304 NRCTITSYDTVNSAIVCNN-VGSSVKMDGK 390
+ T S ++ + + V S VK D K
Sbjct: 9128 QKITNPSDESAKKDVNEDTAVSSIVKKDDK 9157
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.1 bits (57), Expect = 7.0
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Frame = +1
Query: 130 RRASSPEPRSPLALEISSEIVTSINGHRDLEIKLFSTSPPATNSDRRSFFDE--KSESAV 303
+ PE S +ALE+SS+I +S LEI ST P + + E +E+ V
Sbjct: 9094 KTTDEPELDSEIALEVSSDITSS------LEITTESTIPDTAPESQETLNVEIAVTETTV 9147
Query: 304 NRCTITSYDTVNSAIVCNN-VGSSVKMDGK 390
+ T S ++ + + V S VK D K
Sbjct: 9148 QKITNPSDESAKKDVNEDTAVSSIVKKDDK 9177
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.1 bits (57), Expect = 7.0
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Frame = +1
Query: 130 RRASSPEPRSPLALEISSEIVTSINGHRDLEIKLFSTSPPATNSDRRSFFDE--KSESAV 303
+ PE S +ALE+SS+I +S LEI ST P + + E +E+ V
Sbjct: 9094 KTTDEPELDSEIALEVSSDITSS------LEITTESTIPDTAPESQETLNVEIAVTETTV 9147
Query: 304 NRCTITSYDTVNSAIVCNN-VGSSVKMDGK 390
+ T S ++ + + V S VK D K
Sbjct: 9148 QKITNPSDESAKKDVNEDTAVSSIVKKDDK 9177
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 52 RVPERREANNSETYSAPNLYSLFPPTRRASSPEPRSPLALEISSEIVTS 198
R P ++ S +L P+RR+SS PRSP + S IV S
Sbjct: 511 RSPTDVSHDSGRPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRS 559
>AF039046-1|AAB94210.1| 458|Caenorhabditis elegans F-box a protein
protein 195 protein.
Length = 458
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 414 HIGKFFTLFPIHFNTRTDIITDNSTVHCIIARNST-SVHSTFTFF 283
++ KF +FP F T + + ++ TVH + T V F FF
Sbjct: 7 YVAKFQNVFPESFRTFQNFLGNSKTVHMFLENFRTFPVGQIFQFF 51
>L14433-7|AAA27972.1| 469|Caenorhabditis elegans Hypothetical
protein C50C3.1 protein.
Length = 469
Score = 26.6 bits (56), Expect = 9.3
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 76 NNSETYSAPNLYSLFPPTRRASSPEPRSPLALEISSEIVTS--INGHRDLEIKLFSTSPP 249
NN++T +S+ PP +S P P +PL L + S++ I+G ++ + L + +P
Sbjct: 298 NNTDTSDEVQDFSIPPPPYPSSFPAPTTPL-LALMSQLKQRGIISGEQNNQ-PLDNVNPM 355
Query: 250 ATNSDRR 270
DRR
Sbjct: 356 PQQFDRR 362
>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
protein Y51H4A.12 protein.
Length = 1677
Score = 26.6 bits (56), Expect = 9.3
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 4/104 (3%)
Frame = +1
Query: 61 ERREANNSETYSAPNLYSLFPPTRRASSPEPRSPLALEISSEIVTSINGHRDLEIKLFST 240
+R+EA P + R +PE P S++ F+T
Sbjct: 1241 KRKEARRRSKSVTPGVLEAAGTAAREDAPEASIPAPAPSPPASRRSVSRTTQPSTSSFAT 1300
Query: 241 --SPPATNSDRRSFFDEKSE--SAVNRCTITSYDTVNSAIVCNN 360
PPA N RS KSE S+ R T+ T N+
Sbjct: 1301 PTEPPAKNKRMRSVVPPKSEPASSAKRVRATTVATPKDTTASND 1344
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 26.6 bits (56), Expect = 9.3
Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Frame = +1
Query: 61 ERREANNSETYSAPNLYSLFPPTRRASSPEPRSPLALEISSEIVTSINGHRDLEIKLFST 240
+R+EA P + R +PE P+ S++ F+T
Sbjct: 1225 KRKEARRRSKSVTPGVLEAAGTAAREDAPEASIPVPAPSPPASRRSVSRTTQPSTSSFAT 1284
Query: 241 --SPPATNSDRRSFFDEKSESA 300
PPA N RS KSE A
Sbjct: 1285 PTEPPAKNKRMRSVVPPKSEPA 1306
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,235,778
Number of Sequences: 27780
Number of extensions: 234752
Number of successful extensions: 888
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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