Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J07
(511 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 259 7e-70
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 258 2e-69
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 258 2e-69
At1g53180.1 68414.m06027 expressed protein 31 0.60
At5g23575.1 68418.m02766 transmembrane protein, putative similar... 29 1.4
At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to... 29 1.8
At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to... 29 1.8
At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to... 29 1.8
At5g47870.1 68418.m05914 expressed protein 29 2.4
At5g13020.1 68418.m01492 emsy N terminus domain-containing prote... 29 2.4
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 29 2.4
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 3.2
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 28 3.2
At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH) domain... 28 3.2
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 28 4.2
At2g41400.1 68415.m05109 expressed protein 28 4.2
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ... 27 5.5
At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative ... 27 7.3
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR... 27 7.3
At3g19300.1 68416.m02448 protein kinase family protein contains ... 27 7.3
At3g15115.1 68416.m01912 expressed protein 27 7.3
At4g12430.1 68417.m01967 trehalose-6-phosphate phosphatase, puta... 27 9.7
At1g19510.1 68414.m02430 myb family transcription factor contain... 27 9.7
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 259 bits (635), Expect = 7e-70
Identities = 119/160 (74%), Positives = 132/160 (82%)
Frame = +3
Query: 30 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 209
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 210 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 389
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 390 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFP 509
K GT ARV IGQ ++SVR D EALRRAKFKFP
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFP 160
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 258 bits (632), Expect = 2e-69
Identities = 119/160 (74%), Positives = 132/160 (82%)
Frame = +3
Query: 30 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 209
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 210 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 389
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 390 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFP 509
K GT ARV IGQ ++SVR D EALRRAKFKFP
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFP 160
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 258 bits (631), Expect = 2e-69
Identities = 119/160 (74%), Positives = 132/160 (82%)
Frame = +3
Query: 30 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 209
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 210 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 389
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 390 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFP 509
K GT ARV IGQ ++SVR D EALRRAKFKFP
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFP 160
>At1g53180.1 68414.m06027 expressed protein
Length = 358
Score = 30.7 bits (66), Expect = 0.60
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +3
Query: 15 FVENTMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 143
F EN RR +R RYC + PYP S P+ K+ D+GK
Sbjct: 20 FFENLFTRR-SRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60
>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
cleft lip and palate transmembrane protein 1 [Homo
sapiens] GI:4039014; contains Pfam profile PF05602:
Cleft lip and palate transmembrane protein 1 (CLPTM1)
Length = 593
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 440 RHNGLSNTHTRYCALGFPERTTHPSLEPISSSARQHFI 327
++NG H + GFP T P +P++S +R H +
Sbjct: 127 QNNGSLYAHIFFARSGFPIDPTDPEYQPLNSFSRTHAV 164
>At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 303 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 160
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 46 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 189
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 303 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 160
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 51 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 102
>At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 303 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 160
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 46 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At5g47870.1 68418.m05914 expressed protein
Length = 199
Score = 28.7 bits (61), Expect = 2.4
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +3
Query: 291 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 470
R++L PF + +N+ + C+G G+ G + V PI SS
Sbjct: 23 RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77
Query: 471 VIEALRRAKFKFP 509
+IE LR K P
Sbjct: 78 LIEILRDLNKKIP 90
>At5g13020.1 68418.m01492 emsy N terminus domain-containing protein
/ ENT domain-containing protein contains Pfam profile
PF03735: ENT domain
Length = 397
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -3
Query: 503 LELSTTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALGFPERTTHPSLEPISSSARQ 336
L+ S Q ++D P V+ + + S + A+G P + HPS++P SS+ R+
Sbjct: 123 LQSSVPQLVHDAPSPAVSGSRKKQKTSQSIASL-AMGPPSPSLHPSMQPSSSALRR 177
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 213 SEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSC 344
S+A+ G C C+ + K CG+ I+ HP H +++ C
Sbjct: 65 SKAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 210 SSEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINK 332
S E++ G C C+ ++ K CG+ I HP H + +N+
Sbjct: 369 SLESVTDGFYCKSCDIFIHKKCGESSGIIDHSSHPDHTLELNR 411
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 189 SDEYEQLSSEALEAGRICCNKYLV 260
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 153 SLSFCPSRKYGSLGQAH 103
SLSFCPS Y S G+ H
Sbjct: 327 SLSFCPSNIYSSTGRVH 343
>At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to clathrin assembly protein AP180 (GI:6492344) [Xenopus
laevis]
Length = 571
Score = 28.3 bits (60), Expect = 3.2
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 377 THPSLEPISSSARQHFIDADDMEGV*S-HPDVELIFTA-VLYEVLVATD 237
T PS P S+ Q+FID DD+ G+ + PD +I L +V+TD
Sbjct: 358 TEPSPPPPPSANAQNFIDTDDLWGLNTGAPDTSVIEDQNALALAIVSTD 406
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 237 ICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 326
+ C K K C + F I HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136
>At2g41400.1 68415.m05109 expressed protein
Length = 150
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 75 VYSYNIDNISLVGAPLCSPQSDPRA 1
++SY ID +S+ G CS DP A
Sbjct: 26 LWSYTIDRVSIRGVVYCSLDGDPSA 50
>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 342
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 141 KKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG--KDQFHIRMRLHPFH 314
KK + PL + +++ EYE GR CCN ++CG + ++ + P+H
Sbjct: 255 KKHHALRPHPLTLTVITSEYEG------NVGRFCCNACQRESCGFVYEDLGAKIGVLPYH 308
>At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative
contains similarity to CHP-rich zinc finger protein
Length = 305
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 243 CNKYLVKNCGKDQFHIRMRLHPFHVIRINKML 338
C K K C + I+ HPFH +R+ L
Sbjct: 143 CQKNFHKECVQSPLEIKHPSHPFHSLRLYSYL 174
>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1210
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 312 HVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQ 428
H+ RIN +L +D G+ G G + T+ARV Q
Sbjct: 240 HITRINSLLCLESSDVRMIGILGPPGIGKTTIARVLYDQ 278
>At3g19300.1 68416.m02448 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 663
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -3
Query: 500 ELSTTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALG 393
+L T L ++C+ T++ G+ T +C LG
Sbjct: 76 DLGVTSDLTEICITTISRTMELYGIPRNATIFCGLG 111
>At3g15115.1 68416.m01912 expressed protein
Length = 339
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 15 FVENTMGRRPARCYRYCKNKPYP 83
F +N + RR +R RYC + PYP
Sbjct: 26 FFDNLLDRR-SRILRYCHSDPYP 47
>At4g12430.1 68417.m01967 trehalose-6-phosphate phosphatase,
putative similar to trehalose-6-phosphate phosphatase
(AtTPPB) [Arabidopsis thaliana] GI:2944180; contains
Pfam profile PF02358: Trehalose-phosphatase
Length = 368
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 372 SQSGAYQLQRTTTFY*CG*HGRGVVSSGCGTDLYRSS 262
S+ YQL T Y G HG +++S G + ++S+
Sbjct: 151 SRDKVYQLVGLTELYYAGSHGMDIMTSSDGPNCFKST 187
>At1g19510.1 68414.m02430 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 100
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 105 VPDPKIRIFDLGKKRATVDDFPL 173
VP PK + D+G K +DDF L
Sbjct: 69 VPLPKYKTVDVGSKSRGIDDFDL 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,081,608
Number of Sequences: 28952
Number of extensions: 266163
Number of successful extensions: 730
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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