Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J06
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 234 3e-62
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 231 2e-61
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 230 3e-61
01_01_1101 + 8731427-8732938 29 1.3
01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759 29 2.3
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 4.0
04_04_0950 + 29609484-29611025 27 5.3
12_01_0337 - 2591689-2593839 27 7.0
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 27 7.0
02_05_1023 + 33580416-33580904 27 7.0
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 27 7.0
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 27 7.0
12_01_0843 + 7891622-7892524 27 9.2
08_02_0803 + 21390525-21391066,21391799-21391958 27 9.2
08_01_0220 - 1751367-1752854 27 9.2
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7... 27 9.2
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 234 bits (572), Expect = 3e-62
Identities = 105/149 (70%), Positives = 123/149 (82%)
Frame = +1
Query: 4 EEHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 183
++HLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+
Sbjct: 22 KKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISIL 81
Query: 184 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 363
QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCK
Sbjct: 82 MQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCK 141
Query: 364 VRRVATGPKSVPYLVTHDGRTLRYPDPLI 450
VR V G K +P+L T+DGRT+RYPDPLI
Sbjct: 142 VRSVQFGQKGIPFLNTNDGRTIRYPDPLI 170
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 231 bits (565), Expect = 2e-61
Identities = 102/149 (68%), Positives = 123/149 (82%)
Frame = +1
Query: 4 EEHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 183
++HLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISIL 65
Query: 184 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 363
QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCK
Sbjct: 66 MQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCK 125
Query: 364 VRRVATGPKSVPYLVTHDGRTLRYPDPLI 450
VR V G K +PYL T+DGRT+RYPDPLI
Sbjct: 126 VRSVQFGQKGIPYLNTYDGRTIRYPDPLI 154
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 230 bits (563), Expect = 3e-61
Identities = 101/149 (67%), Positives = 123/149 (82%)
Frame = +1
Query: 4 EEHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 183
++HLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISIL 65
Query: 184 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 363
QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCK
Sbjct: 66 MQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCK 125
Query: 364 VRRVATGPKSVPYLVTHDGRTLRYPDPLI 450
VR V G K +PYL T+DGRT+RYPDP+I
Sbjct: 126 VRSVQFGQKGIPYLNTYDGRTIRYPDPII 154
>01_01_1101 + 8731427-8732938
Length = 503
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 174 KHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQ--HP 40
+HL+ L P H R A A L+ + R P R HAA LV+ HP
Sbjct: 29 RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHP 75
>01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759
Length = 428
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 357 VQGAARRDRPQERAVPGDARRAHAPVPG 440
++GA RR R E+A+P + AP PG
Sbjct: 4 LRGAKRRKRQPEKALPAAGQAMPAPAPG 31
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 283 FRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGP 387
+ LIYD++G + + P++A L + V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>04_04_0950 + 29609484-29611025
Length = 513
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 188 CFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 60
CF + + V+ + R +RK + K + L GP +G Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510
>12_01_0337 - 2591689-2593839
Length = 716
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 419 PSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYI 291
P C + Y +L P+A + LH+ + S I + LP S +
Sbjct: 99 PRCASAYAAVLVPLAEAKHLHAAHPVSVRAIHLGLLLPLVSLL 141
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 206 TGKCGLTPRTRRDLWTLYPLRKQMSYSV*YMM*KEGSLSTVSHLKKPSTSCAR 364
+GK L R +RDL L RK S ++ + K L + K + SCA+
Sbjct: 2107 SGKSLLVERLKRDLENLKKSRKSASSTLRKALQKAAQLRLMEKEKNKTPSCAK 2159
>02_05_1023 + 33580416-33580904
Length = 162
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 436 GTGACARRASPGTARSWGRSRRAAPCTAC 350
G GA ARR + + R R A PC AC
Sbjct: 104 GAGAIARRRRTASGAAACRWRSAPPCGAC 132
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -2
Query: 98 LWGPVEGRGAYTPPSLSNIHALGAFKR 18
L G G G Y PPSLSN + AFKR
Sbjct: 51 LLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 442 GPGTGACARRASPGTARSWGRSRRAAPCTACT 347
G T A ASP T+ WGR R +AP TA +
Sbjct: 1065 GARTSTTAAGASPTTSSIWGR-RPSAPRTAAS 1095
>12_01_0843 + 7891622-7892524
Length = 300
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +3
Query: 339 RSQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPA 446
R V G R +P++ A AHAP P P+
Sbjct: 37 RKAVSGSGGGRRGRKPKKAATAATLAPAHAPAPAPS 72
>08_02_0803 + 21390525-21391066,21391799-21391958
Length = 233
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 164 LPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTPP 57
LP Y+S RR S + RSL + R A +PP
Sbjct: 24 LPSRPYISDMRRSAFSDRLLRSLRSEISSRRAPSPP 59
>08_01_0220 - 1751367-1752854
Length = 495
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 11/48 (22%)
Frame = +1
Query: 337 EEAKYKLCKVRRVATGPKSVPY-----------LVTHDGRTLRYPDPL 447
+ A K+C+ R V + P+ P L+ HDGR + PDPL
Sbjct: 190 QPAFMKICQERHVVSTPEKAPAAPLPRSEYLRPLIFHDGRLVGRPDPL 237
>01_01_0001 +
2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
9504-9562
Length = 616
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 94 HKLRECL-PLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 234
H CL PL++ +RN L + + +LKI +R +++ K+R Y
Sbjct: 545 HLEENCLEPLLVDMRNDLSCEMFNDNMLKINVKRCVRMAIKLRKKYIY 592
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,713,124
Number of Sequences: 37544
Number of extensions: 288607
Number of successful extensions: 1001
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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