Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J06
(450 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 262 1e-70
SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42) 28 4.1
SB_52973| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_10756| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08) 27 7.2
SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_23707| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=2.2) 27 7.2
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41) 27 7.2
SB_58516| Best HMM Match : IncA (HMM E-Value=0.68) 27 7.2
SB_39423| Best HMM Match : IncA (HMM E-Value=0.55) 27 9.5
SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_23463| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 262 bits (641), Expect = 1e-70
Identities = 119/149 (79%), Positives = 132/149 (88%)
Frame = +1
Query: 4 EEHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 183
++H+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV KIV
Sbjct: 430 KKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIV 489
Query: 184 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 363
KQRLIK+DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +
Sbjct: 490 KQRLIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGR 549
Query: 364 VRRVATGPKSVPYLVTHDGRTLRYPDPLI 450
VRRV G K VPY+VTHD RT+RYPDP I
Sbjct: 550 VRRVDVGAKGVPYIVTHDARTIRYPDPNI 578
>SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -2
Query: 311 LPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRF 135
+ F ++ NS FS P G+ + +FPS + + ILS +S ++S+F
Sbjct: 23 MSFAEVMRLVNSMDFSTVIFDTAPTGHTLRLLSFPSVIEKSLGKILSLKNSISPFISQF 81
>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1776
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/56 (19%), Positives = 28/56 (50%)
Frame = +1
Query: 145 KYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 312
+Y L ++ + + L++ G + P+YP+ ++ ++ +N+LF + R
Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651
>SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)
Length = 832
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -2
Query: 197 MRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAY 66
+R C+ LS+S S S+FR + GKH ++ +G+G +
Sbjct: 100 LRLCYNCLSSSHISSKCTSKFRCRQCGGKHHTTICERDKGQGPH 143
>SB_52973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 973
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 327 YHT*RSQVQAVQGAARRDRPQERAVPGDARR 419
Y+ ++ ++A G A + + QERA+PGD R+
Sbjct: 662 YYALKAAIRARHGLAPQKK-QERAIPGDTRK 691
>SB_10756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 713
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 267 LNGYNVHKSRRVRGVSPHFPVHFDET 190
L+G+ +RRVR +P FP H D T
Sbjct: 295 LSGFRTLGARRVRIATPSFPHHRDRT 320
>SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -2
Query: 197 MRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAY 66
+R C+ LS+S S S+FR + GKH ++ +G+G +
Sbjct: 413 LRLCYNCLSSSHISSKCTSKFRCRQCRGKHHTTICERDKGQGPH 456
>SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)
Length = 1188
Score = 27.1 bits (57), Expect = 7.2
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = -1
Query: 261 GYNVHKSRRVRGVSPHFPVHFDETLLHNLKHLIAGERVLEPISQEDH*RQAFAQLVGTRR 82
G N K+ + +S + ++ LHNLK A + SQ + R L TR
Sbjct: 843 GGNEAKTLAAQNLSASPDIRRFQSSLHNLKS--AAISLSGSRSQAEPTRNESPSLKETRH 900
Query: 81 GPRRVHAAQL 52
GP +HAA +
Sbjct: 901 GPEEMHAANV 910
>SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1023
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/60 (23%), Positives = 31/60 (51%)
Frame = -2
Query: 437 GYRSVRPSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMD 258
GY++++ + YG++L P+ + +H+ Y + NLP + +++ N V +D
Sbjct: 377 GYQNLKTPPLNLYGSVLDPIGFQECIHAAYRS---------NLPPSFHVEMNRQLVDHID 427
>SB_23707| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=2.2)
Length = 445
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 166 EVLKIVKQRLIKVDGKVRTDP-TYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEE 342
+ L+ K + ++V RT P P GF+ V +EK + + F + P E
Sbjct: 375 QFLRNDKWKTVEVPRATRTFPEARPPGFLSVSPMEKAASRISITQSERSAFRAPQQKPRE 434
Query: 343 AKYKL 357
A+ +L
Sbjct: 435 AQLRL 439
>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
Length = 482
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 319 IHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDG 420
I +TP+ K C+V R++TGP +++ +G
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEG 320
>SB_58516| Best HMM Match : IncA (HMM E-Value=0.68)
Length = 245
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +3
Query: 339 RSQVQAVQGAARRDRP-QERAVPGDARR 419
++ ++A G A R++ QERA+PGD R+
Sbjct: 176 KAAIRARHGLAPREKKKQERALPGDTRK 203
>SB_39423| Best HMM Match : IncA (HMM E-Value=0.55)
Length = 425
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +3
Query: 327 YHT*RSQVQAVQGAARRDRP-QERAVPGDARR 419
Y+ ++ ++A G A R++ QERA+PG+ R+
Sbjct: 352 YYALKAAIRARHGLAPREKKKQERALPGNPRK 383
>SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 962
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 155 SPAMRCLRL*SNVSSKWTGKCGLTPRTRRDLWTLY 259
S RCL+L + S W+G+C LT ++ L+
Sbjct: 778 SDCERCLQLALDRLSSWSGECNLTLNPKKTKTMLF 812
>SB_23463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1430
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 221 LTPRTRRDLWTLYP 262
LTPRT+RD W++ P
Sbjct: 1082 LTPRTKRDTWSIPP 1095
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,285,838
Number of Sequences: 59808
Number of extensions: 335466
Number of successful extensions: 922
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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