Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J06
(450 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 210 4e-55
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr... 31 0.39
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr... 31 0.39
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 29 1.2
M98552-2|AAL11480.1| 921|Caenorhabditis elegans Hypothetical pr... 29 1.6
M98552-1|AAA28205.2| 927|Caenorhabditis elegans Hypothetical pr... 29 1.6
AL132902-6|CAC14421.1| 316|Caenorhabditis elegans Hypothetical ... 29 1.6
Z74042-9|CAA98526.1| 325|Caenorhabditis elegans Hypothetical pr... 27 4.8
U50301-10|AAV28351.1| 513|Caenorhabditis elegans Hypothetical p... 27 4.8
AF022980-5|AAG24192.1| 328|Caenorhabditis elegans Serpentine re... 27 4.8
Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical pr... 27 6.3
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ... 27 6.3
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport... 27 6.3
AF000197-5|AAB52900.3| 579|Caenorhabditis elegans Hypothetical ... 27 6.3
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 210 bits (513), Expect = 4e-55
Identities = 96/147 (65%), Positives = 115/147 (78%)
Frame = +1
Query: 4 EEHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 183
++HLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E KI+
Sbjct: 5 KKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKIL 64
Query: 184 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 363
QR+++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +KLCK
Sbjct: 65 TQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCK 124
Query: 364 VRRVATGPKSVPYLVTHDGRTLRYPDP 444
V+ V T K VP L T DGRT+RYPDP
Sbjct: 125 VKSVRTVNKGVPVLTTTDGRTIRYPDP 151
>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical
protein F11A10.4 protein.
Length = 1646
Score = 31.1 bits (67), Expect = 0.39
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = -2
Query: 344 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 186
A+S +R +V+ F I+ + +FS + T +NP+G S R P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214
>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical
protein F11A10.4 protein.
Length = 1646
Score = 31.1 bits (67), Expect = 0.39
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = -2
Query: 344 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 186
A+S +R +V+ F I+ + +FS + T +NP+G S R P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +1
Query: 307 GRFTIHRITPEEAKYKLCKVRRVATGPKSVP-----YLVTHDGRTLR-YP 438
G+ + R+T E Y+ CK+++ A K VP Y+V H R ++ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>M98552-2|AAL11480.1| 921|Caenorhabditis elegans Hypothetical
protein ZK370.3b protein.
Length = 921
Score = 29.1 bits (62), Expect = 1.6
Identities = 9/31 (29%), Positives = 23/31 (74%)
Frame = -1
Query: 213 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 121
+P H ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597
>M98552-1|AAA28205.2| 927|Caenorhabditis elegans Hypothetical
protein ZK370.3a protein.
Length = 927
Score = 29.1 bits (62), Expect = 1.6
Identities = 9/31 (29%), Positives = 23/31 (74%)
Frame = -1
Query: 213 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 121
+P H ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597
>AL132902-6|CAC14421.1| 316|Caenorhabditis elegans Hypothetical
protein Y71A12B.6 protein.
Length = 316
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 302 TSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMR 192
T+ N F FS T S+NP GY+ V TL +
Sbjct: 236 TASCNGTNEFTFSDPTLSLNPTGYIWGVDQPSGTLAK 272
>Z74042-9|CAA98526.1| 325|Caenorhabditis elegans Hypothetical
protein T11F9.10 protein.
Length = 325
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +2
Query: 320 STVSHLK-KPSTSCARCGASRP 382
+TV HL +P TSCA C ++RP
Sbjct: 19 TTVLHLHIRPPTSCATCTSNRP 40
>U50301-10|AAV28351.1| 513|Caenorhabditis elegans Hypothetical
protein F20D6.12 protein.
Length = 513
Score = 27.5 bits (58), Expect = 4.8
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -2
Query: 374 TRRTLHSLYL--ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGY 231
T R LYL I +I+ L S++K NNSF+F I+ Y
Sbjct: 15 TWRLYDPLYLIFCIPATIHYIIVLKVVSHLKENNSFLFIFTILGISDIFY 64
>AF022980-5|AAG24192.1| 328|Caenorhabditis elegans Serpentine
receptor, class j protein45 protein.
Length = 328
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = -2
Query: 314 NLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRF 135
N YI+ + F +D+T N G + SV ++ +T TI +++ +++ S F
Sbjct: 156 NFELLQYIREDFQETFGLDSTEFNMVGALFSVGSYETTHRAWIATISWSAVSIASITSFF 215
>Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical
protein T18D3.1 protein.
Length = 523
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -2
Query: 398 GTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMD 258
G +L +RR H ++ S +R+ N P TSY KR S V SM+
Sbjct: 120 GGILDVRGSRRREHHHHVVSLYDLRY-PNDPITSYFKRLKSSVTSME 165
>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
related protein 2 protein.
Length = 1272
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 267 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 172
L NVH R G+ PV FD T+ N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496
>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
PGP-2 protein.
Length = 1272
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 267 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 172
L NVH R G+ PV FD T+ N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496
>AF000197-5|AAB52900.3| 579|Caenorhabditis elegans Hypothetical
protein T21G5.1 protein.
Length = 579
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 289 NGITHLFSQWIQRP*IPPGTWGQSALSRPL 200
N + LF+Q IQ +PPGT QS+ P+
Sbjct: 516 NKLPLLFAQTIQATSLPPGTIAQSSTPIPI 545
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,816,610
Number of Sequences: 27780
Number of extensions: 222983
Number of successful extensions: 706
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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