Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J06
(450 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 241 1e-64
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 241 1e-64
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 241 1e-64
At4g23310.1 68417.m03359 receptor-like protein kinase, putative ... 31 0.27
At4g38440.1 68417.m05432 expressed protein 31 0.36
At2g20210.1 68415.m02363 leucine-rich repeat family protein cont... 29 1.1
At4g10710.1 68417.m01751 transcriptional regulator-related simil... 29 1.9
At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ... 29 1.9
At1g72240.1 68414.m08352 expressed protein 29 1.9
At4g08180.3 68417.m01353 oxysterol-binding family protein simila... 28 2.5
At4g08180.2 68417.m01352 oxysterol-binding family protein simila... 28 2.5
At4g08180.1 68417.m01351 oxysterol-binding family protein simila... 28 2.5
At1g61350.1 68414.m06914 armadillo/beta-catenin repeat family pr... 27 4.4
At2g36900.1 68415.m04526 Golgi SNARE protein membrin 11 (MEMB11)... 27 5.9
At5g10730.1 68418.m01243 expressed protein 27 7.7
At2g28350.1 68415.m03445 auxin-responsive factor (ARF10) similar... 27 7.7
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 241 bits (591), Expect = 1e-64
Identities = 109/149 (73%), Positives = 126/149 (84%)
Frame = +1
Query: 4 EEHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 183
++HLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISIL 65
Query: 184 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 363
QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCK
Sbjct: 66 MQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCK 125
Query: 364 VRRVATGPKSVPYLVTHDGRTLRYPDPLI 450
VR + G K +PYL T+DGRT+RYPDPLI
Sbjct: 126 VRSIQFGQKGIPYLNTYDGRTIRYPDPLI 154
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 241 bits (591), Expect = 1e-64
Identities = 109/149 (73%), Positives = 126/149 (84%)
Frame = +1
Query: 4 EEHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 183
++HLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISIL 65
Query: 184 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 363
QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCK
Sbjct: 66 MQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCK 125
Query: 364 VRRVATGPKSVPYLVTHDGRTLRYPDPLI 450
VR + G K +PYL T+DGRT+RYPDPLI
Sbjct: 126 VRSIQFGQKGIPYLNTYDGRTIRYPDPLI 154
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 241 bits (591), Expect = 1e-64
Identities = 109/149 (73%), Positives = 126/149 (84%)
Frame = +1
Query: 4 EEHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 183
++HLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISIL 65
Query: 184 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 363
QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCK
Sbjct: 66 MQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCK 125
Query: 364 VRRVATGPKSVPYLVTHDGRTLRYPDPLI 450
VR + G K +PYL T+DGRT+RYPDPLI
Sbjct: 126 VRSIQFGQKGIPYLNTYDGRTIRYPDPLI 154
>At4g23310.1 68417.m03359 receptor-like protein kinase, putative
similar to receptor-like protein kinase 4 (gi:13506745),
5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
thaliana; contains Pfam protein kinase domain PF00069
Length = 830
Score = 31.5 bits (68), Expect = 0.27
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -2
Query: 215 TFP--STLMRRCFTILST-SLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 60
TFP ST M T+LST S P ++Y + F+ T+GKH + G RG +P
Sbjct: 151 TFPRSSTYMTNLITLLSTLSSPSASYSTGFQNA-TAGKHPDRVTGLFNCRGDVSP 204
>At4g38440.1 68417.m05432 expressed protein
Length = 1465
Score = 31.1 bits (67), Expect = 0.36
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Frame = +1
Query: 16 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL----VIFLRNRLKYALTGNEVLKIV 183
+R+ P W L + V++ + STGP + E L + V FL + G+ +V
Sbjct: 1140 QRMPLPPHWFLSAISAVHSGKTSTGPPESTELLEVAKAGVFFLAGLESSSGFGSLPSPVV 1199
Query: 184 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRF 315
L+ K T MD++ + T L+ + ++ G+F
Sbjct: 1200 SVPLV---WKFHALSTVLLVGMDIIEDKNTRNLYNYLQELYGQF 1240
>At2g20210.1 68415.m02363 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 604
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/49 (28%), Positives = 30/49 (61%)
Frame = -2
Query: 368 RTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGS 222
RTLHSL+ S + R+ + F++ + ++S + S+D + N +G++ +
Sbjct: 291 RTLHSLHFGDSNLDRYFARMVFSTLLD-SSSNLSSLDLSENNISGWLST 338
>At4g10710.1 68417.m01751 transcriptional regulator-related similar
to chromatin-specific transcription elongation factor
FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
Length = 1074
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 167 SLPVSAYLSRFRRKITSGK-HSRSLWGPVEGRGAYTPPSLSNIHAL 33
S+ V ++SR R K HS LWG + TPP+ ++ L
Sbjct: 25 SIDVKNFISRARALYEHWKKHSADLWGSADALAIATPPASDDLRYL 70
>At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase,
putative / steroid 5-alpha-reductase, putative identical
to gi:1280611; contains a steroid 5-alpha reductase,
C-terminal domain
Length = 262
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 203 TLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGP 87
T R C L + P +A L +F + GKH+R+ WGP
Sbjct: 8 TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45
>At1g72240.1 68414.m08352 expressed protein
Length = 133
Score = 28.7 bits (61), Expect = 1.9
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = -2
Query: 320 IVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLS 141
I +L T + + + + ++ A Y GS T S+ + C++ S S S
Sbjct: 49 ICSLCLTERLSKLSLEYYDYTKKAVETATYCGSTSTSSSSSVSSCYSSSSVSSCSSPLQY 108
Query: 140 RFRRKITSGKHSRSLW 93
R+R K GK L+
Sbjct: 109 RYREKKKDGKKQSFLF 124
>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 136 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 270
N ++A+T NE+ +K+RL D ++R D Y G ++ + EK
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 748
>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 136 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 270
N ++A+T NE+ +K+RL D ++R D Y G ++ + EK
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 748
>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 814
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 136 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 270
N ++A+T NE+ +K+RL D ++R D Y G ++ + EK
Sbjct: 704 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 749
>At1g61350.1 68414.m06914 armadillo/beta-catenin repeat family
protein armadillo/beta-catenin-like repeats,
Pfam:PF00514
Length = 573
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = -1
Query: 177 LKHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQHPCFRGV*TLQVLL 4
L++L+ E + + +EDH F +L+G++ +V++ L+ C + T +L+
Sbjct: 297 LRNLVGVEEIKRFMIEEDHTVATFIKLIGSKEEIVQVNSIDLLLSMCCKDEQTRDILV 354
>At2g36900.1 68415.m04526 Golgi SNARE protein membrin 11 (MEMB11) /
Golgi SNAP receptor complex member 2-1 identical to
SP:Q9SJL6; identical to Probable 27 kDa Golgi SNARE
protein (Golgi SNAP receptor complex member 2)
(SP:Q9SJL6) [Arabidopsis thaliana]
Length = 225
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 167 SLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAY 66
+L + Y+SR +RK+ K L G G GA+
Sbjct: 95 NLSLEKYMSRNQRKMLEAKERADLLGRASGEGAH 128
>At5g10730.1 68418.m01243 expressed protein
Length = 287
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 187 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNE 279
+ + KV + TDP +P G +DV I++ ++
Sbjct: 253 ESVAKVAVRAATDPVFPPGIVDVHGIQRYSQ 283
>At2g28350.1 68415.m03445 auxin-responsive factor (ARF10) similar to
auxin response factor 10 GI:6165644 from [Arabidopsis
thaliana]; identical to cDNA auxin response factor 10
(ARF10) mRNA, partial cds GI:6165643
Length = 693
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 359 HSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMD 258
H +Y ++GVI+ I + PF+ ++K MD
Sbjct: 626 HVVYRDANGVIKRIGDEPFSDFMKATKRLTIKMD 659
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,331,524
Number of Sequences: 28952
Number of extensions: 213351
Number of successful extensions: 618
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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