Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J05
(392 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr 2|... 28 0.59
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 27 1.0
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa... 25 3.2
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 25 3.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 3.2
SPAC26A3.03c |rmi1||RecQ mediated genome instability protein Rmi... 25 4.2
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 4.2
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 25 5.5
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 24 7.3
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc... 24 7.3
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 24 7.3
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |... 24 7.3
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 24 7.3
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 24 9.7
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 24 9.7
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo... 24 9.7
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 24 9.7
>SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 27.9 bits (59), Expect = 0.59
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Frame = -3
Query: 252 IKPLCPILDH*LVILLKESEEARLPPASRQLTKQ-------PP---LCQQKNIKQYYYCY 103
I+P+ P+LD V + E+ + PPAS LT + PP L +K+ K YY+ +
Sbjct: 21 IRPIPPVLDMNKVNSMMETMTGKTPPASCGLTSEDLEAGELPPVDVLTFKKSGKPYYFAF 80
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 27.1 bits (57), Expect = 1.0
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -3
Query: 180 PPASRQLTK--QPPLCQQKNIKQYYYCYKNVNY 88
P S+Q T + P+ QQ+N++Q YY +N NY
Sbjct: 650 PFQSQQATGYYKQPMQQQQNMQQPYYNQQNYNY 682
>SPCC1753.03c |rec7||meiotic recombination protein Rec7
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 3.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 259 LKIMLYGVEVSDHQVDQLLLSPSFIPLSQS 348
L +M S Q LLL PS+IP++Q+
Sbjct: 143 LSLMNNAYNKSSAQQPNLLLQPSYIPMTQT 172
>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 3.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 304 PPDGLTPPPHITLFSVIYKTPVP 236
PP+G PP I L S I P P
Sbjct: 280 PPEGSPPPMPIELLSYIINMPPP 302
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 3.2
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -2
Query: 319 IVGADPPDGLTPPPHITLFSVIYKTPVPNS 230
+ GA PP PPP ++ Y P P +
Sbjct: 770 VAGAGPPPPPPPPPAVSAGGSRYYAPAPQA 799
>SPAC26A3.03c |rmi1||RecQ mediated genome instability protein
Rmi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.0 bits (52), Expect = 4.2
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 180 EGVLLQTP-STKLLVNDQELGTGVLYITENN-VIWGGGV 290
+G+ L T TKLLV + + GVL + NN I GG +
Sbjct: 172 KGIQLSTKLGTKLLVKNVLVRRGVLMLDPNNTTILGGSI 210
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.0 bits (52), Expect = 4.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 272 YMGWRCQTIRWISSYYLHPLSHYLN 346
Y+G + Q R++S Y+ HP H N
Sbjct: 1337 YLGTQLQLDRFLSFYFAHPGFHLNN 1361
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -3
Query: 174 ASRQLTKQPPLCQQKNIKQYYYCYKNVNYMFELLDSCTTN 55
ASR++T NI +YY K+ +++ +++ C N
Sbjct: 692 ASREITLLQQSDNHPNIVRYYCKQKSDQFLYIVIELCKCN 731
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 24.2 bits (50), Expect = 7.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +1
Query: 154 FRQLSRCRWKACFFR 198
+R LS WK+CF++
Sbjct: 308 YRHLSDVEWKSCFYK 322
>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
scaffold protein Isu1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 192
Score = 24.2 bits (50), Expect = 7.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 314 YYLHPLSHYLNPRNTEGTL 370
Y+ + L HY NPRN GTL
Sbjct: 54 YHKNVLDHYNNPRNV-GTL 71
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 24.2 bits (50), Expect = 7.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 198 SEEARLPPASRQLTKQPP 145
S EA+LP A+R+ K+PP
Sbjct: 254 SLEAQLPAAARKRKKEPP 271
>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 500
Score = 24.2 bits (50), Expect = 7.3
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -3
Query: 210 LLKESEEARLPPASRQLTKQPPLCQQKNIKQYYYCYKNVNY 88
LLK EE + P + P C +K++ Y Y + +Y
Sbjct: 448 LLKYMEEEKPVPEPYEYGSDGPECLYSFLKKFGYIYDSPDY 488
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 24.2 bits (50), Expect = 7.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 190 STPSTGIETVDETTT 146
STPS G +TV TTT
Sbjct: 337 STPSAGYQTVQTTTT 351
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 23.8 bits (49), Expect = 9.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 322 EIVGADPPDGLTPPPHITLFSVIY 251
+IVG+ PD L + LFS++Y
Sbjct: 324 DIVGSSQPDYLESLDYSQLFSILY 347
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 23.8 bits (49), Expect = 9.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 272 YMGWRCQTIRWISSYYLHPLSHYLN 346
Y+G + R++S YY HP H N
Sbjct: 1313 YLGTQLPFDRFLSFYYAHPGFHINN 1337
>SPAC7D4.06c |alg3||dolichol-P-Man dependent
alpha|Schizosaccharomyces pombe|chr 1|||Manual
Length = 406
Score = 23.8 bits (49), Expect = 9.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 91 IYVLIAVIILFYIFLLAQWWLF 156
I+V+I V ILF I LA +W +
Sbjct: 214 IFVIIIVQILFSIPFLAYFWSY 235
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 23.8 bits (49), Expect = 9.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 283 EVSDHQVDQLLLSPSFIPLSQSTQYRGNLILPSTW 387
E + + +D ++S PLS+ Y+ L L S W
Sbjct: 334 EYNSYLLDHRIVSAFLKPLSEKGNYKDILSLISVW 368
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,670,413
Number of Sequences: 5004
Number of extensions: 32589
Number of successful extensions: 97
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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