Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J05
         (392 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0387 + 23038490-23038662,23039246-23039303,23039471-230395...    31   0.25 
04_04_0850 - 28697462-28697684,28697894-28697971,28698103-286984...    27   7.1  
01_06_1356 + 36627590-36627676,36627869-36628020,36628224-366284...    27   7.1  

>11_06_0387 +
           23038490-23038662,23039246-23039303,23039471-23039551,
           23039640-23039675,23039821-23040060,23040155-23040293,
           23041417-23041889
          Length = 399

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 276 WGGGVRPSGGSAPTISILYPTISIHAIQREPYPALYMVL 392
           WGGG RPSGG    + +++  +S    Q   Y  LY  L
Sbjct: 7   WGGGRRPSGGGGGVV-VMFAWLSSQERQVRAYVELYAAL 44


>04_04_0850 -
           28697462-28697684,28697894-28697971,28698103-28698495,
           28698590-28698893,28698978-28699188,28699943-28700674
          Length = 646

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 174 ASRQLTKQPPLCQQKNIKQYYY 109
           ASR++ K PP C  KN    +Y
Sbjct: 396 ASRKVVKSPPFCSNKNPDAAWY 417


>01_06_1356 +
           36627590-36627676,36627869-36628020,36628224-36628471,
           36628585-36628707,36628797-36629842
          Length = 551

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 237 GTGVLYITENNVIWGGGVRPSGGSAPTISILY-PTISIHAIQREPYP 374
           GT +  +  N+VI+    +  G   PTI +    T+ +HA+   PYP
Sbjct: 32  GTKITQLCMNSVIYTANQQLPG---PTIEVTEGDTLVVHAVNDSPYP 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,070,478
Number of Sequences: 37544
Number of extensions: 235126
Number of successful extensions: 614
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)