Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J05
(392 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21913| Best HMM Match : C2 (HMM E-Value=0.31) 31 0.33
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 29 1.3
SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3) 28 3.1
SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_37165| Best HMM Match : SH3_1 (HMM E-Value=0) 27 7.2
SB_48651| Best HMM Match : ABC_tran (HMM E-Value=2.1e-24) 26 9.5
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_23461| Best HMM Match : DUF504 (HMM E-Value=0.0038) 26 9.5
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0) 26 9.5
SB_46388| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
>SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)
Length = 987
Score = 31.1 bits (67), Expect = 0.33
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 201 ESEEARLPPASRQLTKQPPLCQQKNIKQYYYCYKNVN-YMFELLDSC 64
+SEEA SR K+ P + KN+ ++ Y N+N +M + +SC
Sbjct: 30 DSEEASNTVTSRGTIKRAPKAKTKNVTTQHHIYFNMNSFMCNVEESC 76
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 294 PSGGSAPTISILYPTISIHAIQREPYPALYMV 389
P G SAPT P +S H I +P P +Y V
Sbjct: 1823 PPGASAPT-----PIVSAHGIGNQPVPVMYTV 1849
>SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)
Length = 532
Score = 27.9 bits (59), Expect = 3.1
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +3
Query: 198 TPSTKLLVNDQELGTGVLYIT-ENNVIWGGGVRPSGGSAPTISILYPTISIHAIQREPYP 374
T + V Q TGVL I E+ GV P+ G L P S + REP P
Sbjct: 285 TACPSVRVRTQRCNTGVLGIPGEDGATSSVGVGPARGVNGARGPLPPARSRAVVAREPTP 344
Query: 375 AL 380
AL
Sbjct: 345 AL 346
>SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 243 GVLYITENNVIWGGGVRPSGG 305
G L + E+ + W GG RPS G
Sbjct: 1466 GCLSLNESTIEWAGGQRPSDG 1486
>SB_37165| Best HMM Match : SH3_1 (HMM E-Value=0)
Length = 1034
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = -2
Query: 193 RSTPSTGIETV-DETTTIVPTKK 128
+ P GI++V D+TTTI+P +K
Sbjct: 596 KGIPKKGIQSVSDDTTTIIPRRK 618
>SB_48651| Best HMM Match : ABC_tran (HMM E-Value=2.1e-24)
Length = 569
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Frame = +1
Query: 85 HIIYVLIAVIILFYI----FLLAQWWL 153
H ++ +AVI LF + ++LA WWL
Sbjct: 420 HSLWASMAVIFLFMVTQVVYMLADWWL 446
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 379 RAG*GSLCIAWIEIVG*RMEIVGADPPDGLTPPP 278
RAG GS+ ++I + VG DPP G+ PP
Sbjct: 93 RAGLGSMTTEEVKIPN---KYVGLDPPAGMMSPP 123
>SB_23461| Best HMM Match : DUF504 (HMM E-Value=0.0038)
Length = 657
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 322 EIVGADP--PDGLTPPPHITLFSVIYKTPVPNS*SLTSNFVEGV 197
E+V DP D +T P H+ L ++ P P +L + ++G+
Sbjct: 261 EVVKQDPLLSDSMTQPQHLHLTLLMLTLPSPQQVALATEVLKGL 304
>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 636
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 88 IIYVLIAVIILFYIFLLAQW-WLFRQLSRCRWKA 186
+I+ AV + Y F Q+ +F++L RCRW A
Sbjct: 282 MIFTQAAVNPVIYCFYSKQFRGVFKELLRCRWAA 315
>SB_46388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 241 QGFYISLKIMLYGVEVSDHQVDQLL 315
+G Y+SLK+ GVE++ +D LL
Sbjct: 951 EGLYVSLKLEFGGVELNTSVLDPLL 975
>SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 69 NPIAQTYNLRSYSSNNIVLYF 131
+P YN R+Y SNN L+F
Sbjct: 222 SPATSRYNTRNYHSNNYRLFF 242
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,348,190
Number of Sequences: 59808
Number of extensions: 247096
Number of successful extensions: 627
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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