Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J05
         (392 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62290.1 68418.m07820 nucleotide-sensitive chloride conductan...    31   0.21 
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar...    31   0.28 
At4g10790.1 68417.m01759 UBX domain-containing protein low simil...    27   4.5  
At1g58227.1 68414.m06616 hypothetical protein                          27   6.0  

>At5g62290.1 68418.m07820 nucleotide-sensitive chloride conductance
           regulator (ICln) family protein contains PF03517:
           Nucleotide-sensitive chloride conductance regulator
           (ICln)
          Length = 229

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = +3

Query: 192 LQTPSTKLLVNDQELGTGVLYITENNVIWGGGVRPSGGSAPTISILYPTISIHAIQREP 368
           +QT     L N      G LYIT   +IW   V  + G A    + + +IS+HA+ R+P
Sbjct: 32  VQTSVAVALGNRPIESPGTLYITSRKLIWLSDVDMAKGYA----VDFLSISLHAVSRDP 86


>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
           hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
           PF02854: MIF4G domain
          Length = 1186

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -3

Query: 264 FQ*YIKPLCPILDH*LVILLK-ESEEARLPPASRQLTKQPPLCQQKNIKQYYYCYKNVNY 88
           F  Y   L  +L     +LL+ E E A+L  A  +L++      +K  K Y + Y+N++ 
Sbjct: 245 FNTYYDALADLLQSEHKLLLQMEKENAKLVNAKGELSEDSASSYEKLRKSYDHLYRNISS 304

Query: 87  MFELLD 70
           + E LD
Sbjct: 305 LAEALD 310


>At4g10790.1 68417.m01759 UBX domain-containing protein low
           similarity to SP|Q9UNN5 FAS-associated factor 1 (FAF1
           protein) {Homo sapiens}; contains Pfam profile PF00789:
           UBX domain
          Length = 480

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 246 VLYITENNVIWGGGVRPSGG 305
           V ++ EN V WGG +R S G
Sbjct: 230 VAFVNENFVSWGGSIRSSEG 249


>At1g58227.1 68414.m06616 hypothetical protein
          Length = 1323

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -3

Query: 144 LCQQKNIKQYYYCYKNVNYMFELL---DSCTTNTLRQ 43
           LC ++ ++Q  YC   ++  F L+   D C + TL +
Sbjct: 708 LCSRRLLQQIIYCVGGISVFFPLITQSDRCESETLNE 744


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,678,545
Number of Sequences: 28952
Number of extensions: 177694
Number of successful extensions: 453
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)