Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J04
         (457 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   4.1  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   4.1  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   4.1  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   4.1  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   4.1  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   4.1  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   4.1  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   4.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   9.5  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 4   PGRPKIFTLNNNQLVPASADNS 69
           PG+P   T + N   PAS+ +S
Sbjct: 154 PGKPATSTTSQNLSSPASSTSS 175


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 4   PGRPKIFTLNNNQLVPASADNS 69
           PG+P   T + N   PAS+ +S
Sbjct: 154 PGKPATSTASQNLSSPASSTSS 175


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 4   PGRPKIFTLNNNQLVPASADNS 69
           PG+P   T + N   PAS+ +S
Sbjct: 154 PGKPATSTASQNLSSPASSTSS 175


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 4   PGRPKIFTLNNNQLVPASADNS 69
           PG+P   T + N   PAS+ +S
Sbjct: 154 PGKPATSTASQNLSSPASSTSS 175


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 4   PGRPKIFTLNNNQLVPASADNS 69
           PG+P   T + N   PAS+ +S
Sbjct: 154 PGKPATSTASQNLSSPASSTSS 175


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 4   PGRPKIFTLNNNQLVPASADNS 69
           PG+P   T + N   PAS+ +S
Sbjct: 110 PGKPATSTASQNLSSPASSTSS 131


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 4   PGRPKIFTLNNNQLVPASADNS 69
           PG+P   T + N   PAS+ +S
Sbjct: 154 PGKPATSTASQNLSSPASSTSS 175


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 4   PGRPKIFTLNNNQLVPASADNS 69
           PG+P   T + N   PAS+ +S
Sbjct: 154 PGKPATSTASQNLSSPASSTSS 175


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/21 (38%), Positives = 8/21 (38%)
 Frame = +2

Query: 365 CTRDAHSPRCCVSTAPRALRD 427
           C    H P  C  T P  L D
Sbjct: 94  CDEPVHRPGRCCKTCPGDLYD 114


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.313    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,344
Number of Sequences: 336
Number of extensions: 433
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10406187
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)