Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J04
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    26   3.1  
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce...    26   3.1  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    24   9.6  

>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 31  NNNQLVPASADNSQNLQVKYVQLPSEGGGRTS 126
           NNN L+P+ +  S +  +++  +PS   G ++
Sbjct: 86  NNNPLIPSHSQESSHWTIRHESMPSALAGSSA 117


>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +1

Query: 10  RPKIFTLNNNQLVPASADNSQNLQVKYVQLPSEGGGRTSAGASVGR 147
           +P  ++  +N   P+ AD +  L+ KY    S GGGR+SA  ++GR
Sbjct: 89  KPHDYSDMDNYPRPSHADYTY-LE-KYGVKASSGGGRSSARETIGR 132


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 1   RPGRPKIFTLNNNQLVPASADNSQNLQVKYVQ 96
           R  +PK+ T  +  + PAS  + +++Q+ + Q
Sbjct: 343 RHTKPKLSTTQSTPVKPASLQSEEDIQLSFKQ 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 820,838
Number of Sequences: 5004
Number of extensions: 7850
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)