Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J04
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0401 - 8146758-8146912,8147151-8147235,8147502-8147567,814...    28   3.1  
12_01_1112 - 11866376-11866447,11866528-11866662,11866772-118669...    27   5.4  
11_06_0143 + 20589574-20589684,20590256-20590873,20590943-205910...    27   7.2  
10_08_0297 + 16602176-16602553                                         27   7.2  
06_02_0182 - 12702890-12703387                                         27   7.2  
02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623     27   7.2  

>03_02_0401 -
           8146758-8146912,8147151-8147235,8147502-8147567,
           8147744-8147802,8147911-8148013,8148227-8148358,
           8148447-8148527,8148729-8148821,8148978-8149061,
           8149242-8149300,8149405-8149481,8149639-8149789,
           8150302-8150437
          Length = 426

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 21/61 (34%), Positives = 33/61 (54%)
 Frame = +1

Query: 49  PASADNSQNLQVKYVQLPSEGGGRTSAGASVGRGRRATGTPVKIILNRANFTKLLSPLSN 228
           P+ AD + +   KY     +GGGR+SA  ++  GR A G   K IL   +  ++L+ +S 
Sbjct: 152 PSHADATYDF--KYGVRAVQGGGRSSARETI--GRVAAGALAKKILKLKSGVEILAFVSK 207

Query: 229 V 231
           V
Sbjct: 208 V 208


>12_01_1112 -
           11866376-11866447,11866528-11866662,11866772-11866921,
           11867263-11867338,11867426-11867559,11867655-11867747,
           11868456-11868589,11868696-11868744,11869271-11869441,
           11870291-11870452
          Length = 391

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 106 EGGGRTSAGASVGRGRRATG--TPVKIILNRANF 201
           EGGG+ +AGA+  + R A G  T V    N A F
Sbjct: 23  EGGGKAAAGAAAAKKRVALGNITNVAAAANNAKF 56


>11_06_0143 +
           20589574-20589684,20590256-20590873,20590943-20591010,
           20591159-20591234,20591311-20591372,20591452-20591603,
           20591889-20592052,20592129-20592317,20592417-20592538,
           20592620-20592827,20593238-20593291,20593457-20593626,
           20594265-20594355,20595405-20595529,20596372-20596444,
           20596822-20596914,20597482-20597728,20598305-20598364,
           20598461-20598590,20599008-20599014
          Length = 939

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 61  DNSQNLQVKYVQLPSEGGGRTSAGASVGRGRRATG 165
           D  ++   +  + PS+  GR   GAS GRGR   G
Sbjct: 191 DGEEDKMDEDAKTPSKAAGRGRGGASGGRGRGGGG 225


>10_08_0297 + 16602176-16602553
          Length = 125

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 97  LPSEGGGRTSAGASVGRGRRATGTPV 174
           L S    R +AG   GRGRR  G P+
Sbjct: 34  LSSRRASRAAAGGRGGRGRRKGGAPI 59


>06_02_0182 - 12702890-12703387
          Length = 165

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 67  SQNLQVKYVQLPSEGGGRTSAGASVGRGRRA 159
           S  L  + + +PS GGG TS  A  G+GRRA
Sbjct: 56  SVRLLTRGLVVPSGGGGSTSPSAR-GKGRRA 85


>02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623
          Length = 400

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +1

Query: 40  QLVPASADNSQNLQVKYVQLPSEGGGRTSAGASVGRGRRATG 165
           Q  P +A        +  Q  + GGGR  AGA  G G    G
Sbjct: 239 QAAPVAAQAQAAAMAEQAQGQAAGGGRGGAGAGGGHGGAGAG 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,473,027
Number of Sequences: 37544
Number of extensions: 72497
Number of successful extensions: 298
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)