Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J04
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)                30   1.0  
SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_48047| Best HMM Match : Phage_QLRG (HMM E-Value=5.3)                27   5.6  

>SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)
          Length = 617

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 52  ASADNSQNLQVKYVQLPSEGGGRTSAGASVGRGRRATGTPVK 177
           A   + +    K   LPS+ GG  + GA  GRG    G P +
Sbjct: 313 AEKKSGEGTPQKTAALPSKPGGVAARGAPAGRGAATRGAPAR 354


>SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1106

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 4   PGRPKIFTLNNNQLVPASADNSQNLQVKYVQLPSEGGGRTSA 129
           PG PKIF  NNN     +   S  L  +Y ++ ++  GR  A
Sbjct: 603 PGAPKIFPGNNNNKDTVTTTFSPPLMARYFRIVAKTCGRACA 644


>SB_48047| Best HMM Match : Phage_QLRG (HMM E-Value=5.3)
          Length = 418

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/51 (23%), Positives = 28/51 (54%)
 Frame = +1

Query: 16  KIFTLNNNQLVPASADNSQNLQVKYVQLPSEGGGRTSAGASVGRGRRATGT 168
           K ++ +  + +P+ + ++ N+  +  + PS+GG +   G S G+ R +  T
Sbjct: 315 KFYSDDIAKCMPSRSFSAPNMGNEQFEWPSKGGSQQKVGISEGKSRTSQAT 365


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,865,473
Number of Sequences: 59808
Number of extensions: 73569
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)