Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J04
         (457 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48850.1 68414.m05469 chorismate synthase, putative / 5-enolp...    31   0.49 
At5g48600.1 68418.m06011 structural maintenance of chromosomes (...    29   2.0  
At4g17960.1 68417.m02674 expressed protein                             27   4.5  
At5g04770.1 68418.m00492 amino acid permease family protein simi...    27   6.0  
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ...    27   6.0  
At5g46915.1 68418.m05784 transcriptional factor B3 family protei...    27   7.9  
At1g02850.4 68414.m00250 glycosyl hydrolase family 1 protein con...    27   7.9  
At1g02850.3 68414.m00249 glycosyl hydrolase family 1 protein con...    27   7.9  
At1g02850.2 68414.m00248 glycosyl hydrolase family 1 protein con...    27   7.9  
At1g02850.1 68414.m00247 glycosyl hydrolase family 1 protein con...    27   7.9  

>At1g48850.1 68414.m05469 chorismate synthase, putative /
           5-enolpyruvylshikimate-3-phosphate phospholyase,
           putative similar to chorismate synthase from
           Lycopersicon esculentum [SP|Q42884], Corydalis
           sempervirens [SP|P27793]; contains Pfam chorismate
           synthase domain PF01264
          Length = 436

 Score = 30.7 bits (66), Expect = 0.49
 Identities = 22/61 (36%), Positives = 35/61 (57%)
 Frame = +1

Query: 49  PASADNSQNLQVKYVQLPSEGGGRTSAGASVGRGRRATGTPVKIILNRANFTKLLSPLSN 228
           P+ AD + ++  KY     +GGGR+SA  ++  GR A G   K IL +   T++L+ +S 
Sbjct: 153 PSHADATYDM--KYGVRSVQGGGRSSARETI--GRVAPGALAKKILKQFAGTEILAYVSQ 208

Query: 229 V 231
           V
Sbjct: 209 V 209


>At5g48600.1 68418.m06011 structural maintenance of chromosomes
           (SMC) family protein similar to SP|P50532 Chromosome
           assembly protein XCAP-C {Xenopus laevis}; contains Pfam
           profiles PF02483: SMC family C-terminal domain, PF02463:
           RecF/RecN/SMC N terminal domain
          Length = 1241

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 109 GGGRTSAGASVGRGRRATGTPVKIILNRAN-FTKLLSPLSNV 231
           GGG  + G  +G   RATG   + + N  N  +K++  L+N+
Sbjct: 697 GGGGKARGGRMGTSIRATGVSGEAVANAENELSKIVDMLNNI 738


>At4g17960.1 68417.m02674 expressed protein
          Length = 154

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 112 GGRTSAGASVGRGRRATGTPVKIILNRANFTKLLSPLSN 228
           GG        G  R+  G PV++ + R+    LL P +N
Sbjct: 31  GGNQQRFRETGLPRKGFGVPVQVAVERSQLGPLLQPCAN 69


>At5g04770.1 68418.m00492 amino acid permease family protein similar
           to cationic amino acid transporter-1 [Rattus norvegicus]
           GI:1589917; contains Pfam profile PF00324: Amino acid
           permease
          Length = 583

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 438 TSRPSRRARGAVLTQQRGECASRVQGVRAQLLRRTAR 328
           ++ PSR +R A+      +  SRV+ V  + +RRT R
Sbjct: 26  SATPSRLSRRAISVSTSSDEMSRVRAVSGEQMRRTLR 62


>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 352

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 447 DVSTSRPSRRARGAVLTQQRGEC 379
           D  T R +R ARG     QRGEC
Sbjct: 122 DEETRRQNREARGVCRAFQRGEC 144


>At5g46915.1 68418.m05784 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 288

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +1

Query: 1   RPGRPKIFTLNNNQLVPASADNSQNLQVKYVQLPSEGGGRTSAGASVGR 147
           +P +P+ F  +++++     +  ++ + + V   S   GRT+A  SVGR
Sbjct: 101 QPPQPRAFLASSSRIRRFRTEQGEDDKKEEVVSESSNRGRTTAAESVGR 149


>At1g02850.4 68414.m00250 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to hydroxyisourate hydrolase (GI:19569603)
           [Glycine max]
          Length = 471

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 7   GRPKIFTLNNNQLVPASADNSQNLQVKYV 93
           G P ++ L N Q+ P S+      +VKY+
Sbjct: 364 GNPPVYILENGQMTPHSSSLVDTTRVKYL 392


>At1g02850.3 68414.m00249 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to hydroxyisourate hydrolase (GI:19569603)
           [Glycine max]
          Length = 473

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 7   GRPKIFTLNNNQLVPASADNSQNLQVKYV 93
           G P ++ L N Q+ P S+      +VKY+
Sbjct: 367 GNPPVYILENGQMTPHSSSLVDTTRVKYL 395


>At1g02850.2 68414.m00248 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to hydroxyisourate hydrolase (GI:19569603)
           [Glycine max]
          Length = 497

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 7   GRPKIFTLNNNQLVPASADNSQNLQVKYV 93
           G P ++ L N Q+ P S+      +VKY+
Sbjct: 391 GNPPVYILENGQMTPHSSSLVDTTRVKYL 419


>At1g02850.1 68414.m00247 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to hydroxyisourate hydrolase (GI:19569603)
           [Glycine max]
          Length = 470

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 7   GRPKIFTLNNNQLVPASADNSQNLQVKYV 93
           G P ++ L N Q+ P S+      +VKY+
Sbjct: 364 GNPPVYILENGQMTPHSSSLVDTTRVKYL 392


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,591,847
Number of Sequences: 28952
Number of extensions: 46731
Number of successful extensions: 115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)