Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J03
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0305 - 2181727-2184793,2185635-2185945                           30   1.5  
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704     29   2.7  
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    28   4.6  

>07_01_0305 - 2181727-2184793,2185635-2185945
          Length = 1125

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 283 KGCLIFNINL*IKQYDCSKNLSRFVLRTNTIRRWAVE 393
           K CL + ++L I+    S N +  + RT+ +RRWA E
Sbjct: 562 KSCLTY-LSLFIQDDGSSSNSTMMIRRTSLVRRWAAE 597


>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
          Length = 748

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 299 LTSIYE*NNMTA-VRTCPGLYCGRTQLEDGLWSDCGACPRGFRTNVSSYCVPCEDE 463
           +TS+ E   MT  + TCP +  GR  LE+G  S  G C       ++SY V  E++
Sbjct: 145 VTSVNETEYMTGCMATCPSV--GR--LENGSCSGMGCCEAAIPRGINSYVVGFEEK 196


>06_03_0099 +
           16633928-16638213,16638299-16638386,16638823-16638950,
           16640008-16640278
          Length = 1590

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 494 NLSTASHTMLVHLHKAHNNLRHLS*NREDKPRNHSTAHLLIVFVRNTNLD 345
           NL+++S   ++  H  HN +   S  R+D  RN S   + +  VR TN +
Sbjct: 530 NLASSSKNTMISKH--HNTVDQKSTTRKDDSRNRSQKIMELSEVRGTNTE 577


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,580,641
Number of Sequences: 37544
Number of extensions: 247466
Number of successful extensions: 476
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)