Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J03
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   4e-17
SB_8560| Best HMM Match : E-MAP-115 (HMM E-Value=6.4)                  32   0.39 
SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 29   2.7  
SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)                  29   2.7  
SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   4.8  
SB_17877| Best HMM Match : Metallophos (HMM E-Value=2.1)               28   6.3  
SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32)             28   6.3  
SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18)                   27   8.3  

>SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 35/65 (53%), Positives = 43/65 (66%)
 Frame = +2

Query: 344 CPGLYCGRTQLEDGLWSDCGACPRGFRTNVSSYCVPCEDEPTLYDWQYLGFMVLLPMVLH 523
           CPG YCGR Q  +G +  C ACPRG+R+     CV C     L+DW YLGF++L  +VLH
Sbjct: 30  CPGQYCGRVQDRNGKFGKCQACPRGYRS-YGDLCVKCTKSLRLHDWLYLGFIILTVIVLH 88

Query: 524 WFFID 538
           WFFID
Sbjct: 89  WFFID 93


>SB_8560| Best HMM Match : E-MAP-115 (HMM E-Value=6.4)
          Length = 173

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 344 CPGLYCGRTQLEDGLWSDCGAC 409
           CPG YCGR Q  +G +  C  C
Sbjct: 143 CPGQYCGRVQDRNGKFGKCQVC 164


>SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 995

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +2

Query: 356 YCGRTQLEDGLWSDCGACPRGFRTNV--SSYCVPC 454
           +CG        WS C  CP G  T+V  SS C+ C
Sbjct: 598 FCGTGDYSQPGWSKCKPCPSGTFTDVPGSSECLRC 632


>SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 205

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 356 YCGRTQLEDGLWS-DCGACPRGFRTNVSSYCVPCE 457
           Y G+ + + G+   DCG C  GF    S  C PC+
Sbjct: 78  YGGQCRCKPGVEGRDCGRCKPGFYNMTSEGCRPCD 112


>SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 683

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 356 YCGRTQLEDGLWS-DCGACPRGFRTNVSSYCVPCE 457
           Y G+ + + G+   DCG C  GF    S  C PC+
Sbjct: 44  YGGQCRCKPGVEGRDCGRCKPGFYNMTSEGCRPCD 78


>SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1101

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 356 YCGRTQLEDGLWS-DCGACPRGFRTNVSSYCVPCE 457
           Y G+ Q + G+    C  C  GF    SS C PC+
Sbjct: 745 YGGKCQCKPGVTGRTCDKCKPGFYNFTSSGCAPCD 779


>SB_17877| Best HMM Match : Metallophos (HMM E-Value=2.1)
          Length = 248

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 362 GRTQLEDGLWSDCGACPR 415
           GRT+L D    DC ACPR
Sbjct: 98  GRTELRDRNQKDCEACPR 115


>SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32)
          Length = 773

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 356 YCGRTQLEDGLWSDCGACPRG-FRTNVSSY-CVPCED 460
           YC +    D + +DC  CP G F++ +S+  C PC +
Sbjct: 249 YCKKGYAYDKVNNDCKGCPPGNFKSTLSNTGCRPCPE 285


>SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18)
          Length = 1044

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 398 CGACPRGFRTNVSSYCVPCEDEPTLYDWQYLGFMVLLPMV 517
           CGAC RG+   + S C  C   P L   Q++G  ++L ++
Sbjct: 303 CGACSRGY-YRMFSGCNKCPSTP-LVITQFVGVFLVLALI 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,183,816
Number of Sequences: 59808
Number of extensions: 302812
Number of successful extensions: 646
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)