Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J03
         (575 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533510-1|CAG38541.1|  311|Homo sapiens C14orf100 protein.           101   2e-21
CR457163-1|CAG33444.1|  305|Homo sapiens C14orf100 protein.           101   2e-21
BC010359-1|AAH10359.1|  311|Homo sapiens chromosome 14 open read...   101   2e-21
BC005198-1|AAH05198.1|  305|Homo sapiens C14orf100 protein protein.   101   2e-21
AK027591-1|BAB55216.1|  311|Homo sapiens protein ( Homo sapiens ...   101   2e-21
AF212245-1|AAG41781.1|  305|Homo sapiens CDA06 protein.               101   2e-21
AK021683-1|BAB13874.1|  305|Homo sapiens protein ( Homo sapiens ...    99   6e-21
AF529304-1|AAP85636.1|  248|Homo sapiens medulloblastoma antigen...    31   3.8  
BX322234-1|CAI23645.1| 1172|Homo sapiens thrombospondin 2 protein.     30   5.1  
BC150175-1|AAI50176.1| 1172|Homo sapiens thrombospondin 2 protein.     30   5.1  
BC146676-1|AAI46677.1| 1172|Homo sapiens thrombospondin 2 protein.     30   5.1  

>CR533510-1|CAG38541.1|  311|Homo sapiens C14orf100 protein.
          Length = 311

 Score =  101 bits (242), Expect = 2e-21
 Identities = 44/81 (54%), Positives = 55/81 (67%), Gaps = 4/81 (4%)
 Frame = +2

Query: 344 CPGLYCGRTQL-EDG---LWSDCGACPRGFRTNVSSYCVPCEDEPTLYDWQYLGFMVLLP 511
           C GLYCG+T L ++G   ++ +CG CPRG RTN   YC PC + P LYDW YLGFM +LP
Sbjct: 9   CLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLYLGFMAMLP 68

Query: 512 MVLHWFFIDMVTIGKGQDGVL 574
           +VLHWFFI+  + GK     L
Sbjct: 69  LVLHWFFIEWYS-GKKSSSAL 88


>CR457163-1|CAG33444.1|  305|Homo sapiens C14orf100 protein.
          Length = 305

 Score =  101 bits (242), Expect = 2e-21
 Identities = 44/81 (54%), Positives = 55/81 (67%), Gaps = 4/81 (4%)
 Frame = +2

Query: 344 CPGLYCGRTQL-EDG---LWSDCGACPRGFRTNVSSYCVPCEDEPTLYDWQYLGFMVLLP 511
           C GLYCG+T L ++G   ++ +CG CPRG RTN   YC PC + P LYDW YLGFM +LP
Sbjct: 3   CLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLYLGFMAMLP 62

Query: 512 MVLHWFFIDMVTIGKGQDGVL 574
           +VLHWFFI+  + GK     L
Sbjct: 63  LVLHWFFIEWYS-GKKSSSAL 82


>BC010359-1|AAH10359.1|  311|Homo sapiens chromosome 14 open reading
           frame 100 protein.
          Length = 311

 Score =  101 bits (242), Expect = 2e-21
 Identities = 44/81 (54%), Positives = 55/81 (67%), Gaps = 4/81 (4%)
 Frame = +2

Query: 344 CPGLYCGRTQL-EDG---LWSDCGACPRGFRTNVSSYCVPCEDEPTLYDWQYLGFMVLLP 511
           C GLYCG+T L ++G   ++ +CG CPRG RTN   YC PC + P LYDW YLGFM +LP
Sbjct: 9   CLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLYLGFMAMLP 68

Query: 512 MVLHWFFIDMVTIGKGQDGVL 574
           +VLHWFFI+  + GK     L
Sbjct: 69  LVLHWFFIEWYS-GKKSSSAL 88


>BC005198-1|AAH05198.1|  305|Homo sapiens C14orf100 protein protein.
          Length = 305

 Score =  101 bits (242), Expect = 2e-21
 Identities = 44/81 (54%), Positives = 55/81 (67%), Gaps = 4/81 (4%)
 Frame = +2

Query: 344 CPGLYCGRTQL-EDG---LWSDCGACPRGFRTNVSSYCVPCEDEPTLYDWQYLGFMVLLP 511
           C GLYCG+T L ++G   ++ +CG CPRG RTN   YC PC + P LYDW YLGFM +LP
Sbjct: 3   CLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLYLGFMAMLP 62

Query: 512 MVLHWFFIDMVTIGKGQDGVL 574
           +VLHWFFI+  + GK     L
Sbjct: 63  LVLHWFFIEWYS-GKKSSSAL 82


>AK027591-1|BAB55216.1|  311|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14685 fis, clone NT2RP2004936. ).
          Length = 311

 Score =  101 bits (242), Expect = 2e-21
 Identities = 44/81 (54%), Positives = 55/81 (67%), Gaps = 4/81 (4%)
 Frame = +2

Query: 344 CPGLYCGRTQL-EDG---LWSDCGACPRGFRTNVSSYCVPCEDEPTLYDWQYLGFMVLLP 511
           C GLYCG+T L ++G   ++ +CG CPRG RTN   YC PC + P LYDW YLGFM +LP
Sbjct: 9   CLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLYLGFMAMLP 68

Query: 512 MVLHWFFIDMVTIGKGQDGVL 574
           +VLHWFFI+  + GK     L
Sbjct: 69  LVLHWFFIEWYS-GKKSSSAL 88


>AF212245-1|AAG41781.1|  305|Homo sapiens CDA06 protein.
          Length = 305

 Score =  101 bits (242), Expect = 2e-21
 Identities = 44/81 (54%), Positives = 55/81 (67%), Gaps = 4/81 (4%)
 Frame = +2

Query: 344 CPGLYCGRTQL-EDG---LWSDCGACPRGFRTNVSSYCVPCEDEPTLYDWQYLGFMVLLP 511
           C GLYCG+T L ++G   ++ +CG CPRG RTN   YC PC + P LYDW YLGFM +LP
Sbjct: 3   CLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLYLGFMAMLP 62

Query: 512 MVLHWFFIDMVTIGKGQDGVL 574
           +VLHWFFI+  + GK     L
Sbjct: 63  LVLHWFFIEWYS-GKKSSSAL 82


>AK021683-1|BAB13874.1|  305|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11621 fis, clone HEMBA1004143. ).
          Length = 305

 Score =   99 bits (238), Expect = 6e-21
 Identities = 43/81 (53%), Positives = 54/81 (66%), Gaps = 4/81 (4%)
 Frame = +2

Query: 344 CPGLYCGRTQL-EDG---LWSDCGACPRGFRTNVSSYCVPCEDEPTLYDWQYLGFMVLLP 511
           C GLYCG+T L ++G   ++ +CG CPRG RTN   YC PC + P LYDW YLGFM +LP
Sbjct: 3   CLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLYLGFMAMLP 62

Query: 512 MVLHWFFIDMVTIGKGQDGVL 574
           + LHWFFI+  + GK     L
Sbjct: 63  LALHWFFIEWYS-GKKSSSAL 82


>AF529304-1|AAP85636.1|  248|Homo sapiens medulloblastoma antigen
           MU-MB-50.4 protein.
          Length = 248

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 497 MVLLPMVLHWFFIDMVTIGKGQDGVL 574
           M +LP+VLHWFFI+  + GK     L
Sbjct: 1   MAMLPLVLHWFFIEWYS-GKKSSSAL 25


>BX322234-1|CAI23645.1| 1172|Homo sapiens thrombospondin 2 protein.
          Length = 1172

 Score = 30.3 bits (65), Expect = 5.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 347 PGLYCGRTQLEDGLWSDCGACPRGFRTNVSSYC 445
           PG  C  +   DG WS CG+CP GF  N  ++C
Sbjct: 560 PGAQC--SSFPDGSWS-CGSCPVGFLGN-GTHC 588


>BC150175-1|AAI50176.1| 1172|Homo sapiens thrombospondin 2 protein.
          Length = 1172

 Score = 30.3 bits (65), Expect = 5.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 347 PGLYCGRTQLEDGLWSDCGACPRGFRTNVSSYC 445
           PG  C  +   DG WS CG+CP GF  N  ++C
Sbjct: 560 PGAQC--SSFPDGSWS-CGSCPVGFLGN-GTHC 588


>BC146676-1|AAI46677.1| 1172|Homo sapiens thrombospondin 2 protein.
          Length = 1172

 Score = 30.3 bits (65), Expect = 5.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 347 PGLYCGRTQLEDGLWSDCGACPRGFRTNVSSYC 445
           PG  C  +   DG WS CG+CP GF  N  ++C
Sbjct: 560 PGAQC--SSFPDGSWS-CGSCPVGFLGN-GTHC 588


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,874,247
Number of Sequences: 237096
Number of extensions: 1575807
Number of successful extensions: 2881
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2874
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)