Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J03
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF304119-1|AAG50232.1|  326|Caenorhabditis elegans seven transme...    54   6e-08
AF068718-6|AAC17769.2|  326|Caenorhabditis elegans Hypothetical ...    54   6e-08
U28741-4|AAA68328.1|  747|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z92838-6|CAB07411.1|   84|Caenorhabditis elegans Hypothetical pr...    28   5.5  
L29440-1|AAA98752.1|  570|Caenorhabditis elegans endoprotease pr...    28   5.5  
AF039719-1|AAB96754.1|  942|Caenorhabditis elegans Blistered cut...    28   5.5  
Z71185-6|CAI46563.1|  286|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine rece...    27   7.2  
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AF304119-1|AAG50232.1|  326|Caenorhabditis elegans seven
           transmembrane protein protein.
          Length = 326

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 23/48 (47%), Positives = 28/48 (58%)
 Frame = +2

Query: 392 SDCGACPRGFRTNVSSYCVPCEDEPTLYDWQYLGFMVLLPMVLHWFFI 535
           S CG C  G+R N  S C  C+     YDW YL F+ LLP++LH  FI
Sbjct: 45  SRCGPCSFGYRNNAMSICESCDTPLQPYDWMYLLFIALLPLLLHMQFI 92


>AF068718-6|AAC17769.2|  326|Caenorhabditis elegans Hypothetical
           protein R01B10.5 protein.
          Length = 326

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 23/48 (47%), Positives = 28/48 (58%)
 Frame = +2

Query: 392 SDCGACPRGFRTNVSSYCVPCEDEPTLYDWQYLGFMVLLPMVLHWFFI 535
           S CG C  G+R N  S C  C+     YDW YL F+ LLP++LH  FI
Sbjct: 45  SRCGPCSFGYRNNAMSICESCDTPLQPYDWMYLLFIALLPLLLHMQFI 92


>U28741-4|AAA68328.1|  747|Caenorhabditis elegans Hypothetical
           protein F35D2.4 protein.
          Length = 747

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 398 CGACPRGFRTNVSSYCVPCE 457
           CG C  GF  N + YC  CE
Sbjct: 100 CGNCASGFYRNDNGYCTKCE 119


>Z92838-6|CAB07411.1|   84|Caenorhabditis elegans Hypothetical
           protein T03D8.7 protein.
          Length = 84

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 459 MNQHCMTGST*VLWFCCPWCY 521
           +NQHC  G+     +CCP CY
Sbjct: 30  INQHCPNGTMCNNNWCCPGCY 50


>L29440-1|AAA98752.1|  570|Caenorhabditis elegans endoprotease
           protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 398 CGACPRGFRTNVSSYCVPCEDEPTLYDWQ 484
           C  C +G+      YC PC  E +   WQ
Sbjct: 452 CEKCSKGYGKGSIGYCRPCCPEGSTKSWQ 480


>AF039719-1|AAB96754.1|  942|Caenorhabditis elegans Blistered
           cuticle protein 4, isoformd protein.
          Length = 942

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 398 CGACPRGFRTNVSSYCVPCEDEPTLYDWQ 484
           C  C +G+      YC PC  E +   WQ
Sbjct: 824 CEKCSKGYGKGSIGYCRPCCPEGSTKSWQ 852


>Z71185-6|CAI46563.1|  286|Caenorhabditis elegans Hypothetical
           protein C35A5.10 protein.
          Length = 286

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +2

Query: 356 YCGRTQLEDGLWSDCGACPRGFRTNVSSYCVPC 454
           +CG T+   G+  + G CP G      + C  C
Sbjct: 188 FCGATEPSGGVCRNNGVCPSGHSCVAGNVCCRC 220


>U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein19 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -1

Query: 452 KAHNNLRHLS*NREDKPRNHSTAHLLIVFVRNTNLDKFLLQSYCFI 315
           +AHN L  L  N+ D+  N S++ LLI F     +  F+L ++ FI
Sbjct: 161 EAHNKLNALKQNKTDQFLNCSSSFLLIPF--TDYVSTFVLGAWIFI 204


>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 407 CPRGFRTNVSSYCVPCED 460
           CP G+  N SSYC P  +
Sbjct: 446 CPAGYECNDSSYCCPSSE 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,367,100
Number of Sequences: 27780
Number of extensions: 242489
Number of successful extensions: 534
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)