Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J03
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   8.7  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +2

Query: 383 GLWSDCGACPRGFRTNVSSYCVPCEDEPTLYDWQ--YLGFMVLLPMVLH 523
           G WS   A  R  +   S+ C  CE +P + D+   Y G+   L  + H
Sbjct: 199 GTWSPDPAINRRLKETYSNMCALCE-KPEVCDYPDIYSGYEGALRCLAH 246


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +2

Query: 383 GLWSDCGACPRGFRTNVSSYCVPCEDEPTLYDWQ--YLGFMVLLPMVLH 523
           G WS   A  R  +   S+ C  CE +P + D+   Y G+   L  + H
Sbjct: 199 GTWSPDPAINRRLKETYSNMCALCE-KPEVCDYPDIYSGYEGALRCLAH 246


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +2

Query: 383 GLWSDCGACPRGFRTNVSSYCVPCEDEPTLYDWQ--YLGFMVLLPMVLH 523
           G WS   A  R  +   S+ C  CE +P + D+   Y G+   L  + H
Sbjct: 199 GTWSPDPAINRRLKETYSNMCALCE-KPEVCDYPDIYSGYEGALRCLAH 246


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = -1

Query: 521 VTPWATEP*NLSTASHTMLVHLHKAHNNLRHLS*NREDKPRNHSTAHLLIVF 366
           V+P    P  ++    ++   L K   +  H S N+E +   +   HL + F
Sbjct: 219 VSPQEERPKGINGRRASLFCGLQKYTRSFAHQSINKEARSNLYLPFHLTLSF 270


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = -1

Query: 521 VTPWATEP*NLSTASHTMLVHLHKAHNNLRHLS*NREDKPRNHSTAHLLIVF 366
           V+P    P  ++    ++   L K   +  H S N+E +   +   HL + F
Sbjct: 214 VSPQEERPKGINGRRASLFCGLQKYTRSFAHQSINKEARSNLYLPFHLTLSF 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,217
Number of Sequences: 438
Number of extensions: 2897
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)