Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J03
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g35330.1 68414.m04379 zinc finger (C3HC4-type RING finger) fa...    29   2.9  
At1g23180.1 68414.m02896 armadillo/beta-catenin repeat family pr...    28   3.9  
At4g09120.1 68417.m01505 zinc finger (C3HC4-type RING finger) fa...    28   5.1  
At3g26290.1 68416.m03280 cytochrome P450 71B26, putative (CYP71B...    28   5.1  
At2g02580.1 68415.m00198 cytochrome P450 family protein                27   9.0  

>At1g35330.1 68414.m04379 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 327

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -1

Query: 404 PRNHSTAHLLIVFVRNTNLDKFLLQ 330
           PR+HST H L+   R  NLD+F LQ
Sbjct: 249 PRSHSTGHSLV--PRVENLDRFTLQ 271


>At1g23180.1 68414.m02896 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 834

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +1

Query: 241 NLVLCIPCCQRNKLKGCLIFNINL*IKQYDCSKNLSRFVL 360
           NL L    CQR + +G + F INL +KQ + S N++  VL
Sbjct: 493 NLSLSRTVCQRIEAEGAVWFLINL-LKQPEISLNVTEHVL 531


>At4g09120.1 68417.m01505 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 345

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 404 PRNHSTAHLLIVFVRNTNLDKFLLQ 330
           PR+HST H L+  +   NLD+F LQ
Sbjct: 223 PRSHSTGHSLVQQL-GENLDRFTLQ 246


>At3g26290.1 68416.m03280 cytochrome P450 71B26, putative (CYP71B26)
           identical to cytochrome P450 71B26 (SP:Q9LTL0)
           [Arabidopsis thaliana]; contains Pfam profile: PF00067
           cytochrome P450
          Length = 500

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 338 RTCPGLYCGRTQLEDGL 388
           R CPGLY G T +E GL
Sbjct: 438 RICPGLYMGTTMVEFGL 454


>At2g02580.1 68415.m00198 cytochrome P450 family protein 
          Length = 500

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 338 RTCPGLYCGRTQLEDGL 388
           R CPG+Y G T +E GL
Sbjct: 438 RICPGMYMGTTMVEFGL 454


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,370,406
Number of Sequences: 28952
Number of extensions: 214040
Number of successful extensions: 473
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)