Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J02
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86...   192   2e-49
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880...   190   8e-49
04_04_0944 - 29557360-29557485,29557570-29557698,29557875-295579...    29   4.3  
10_08_0694 - 19929918-19930292,19930633-19930866                       28   5.7  
02_05_0682 + 30857876-30858106,30858187-30858399,30858867-308590...    28   5.7  
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331...    28   7.6  

>06_01_0110 -
           866728-866952,867035-867193,867315-867448,868225-868333
          Length = 208

 Score =  192 bits (469), Expect = 2e-49
 Identities = 95/193 (49%), Positives = 129/193 (66%), Gaps = 2/193 (1%)
 Frame = +1

Query: 85  MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 264
           M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V+C
Sbjct: 1   MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60

Query: 265 PTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYR 444
            T++Y+ K RAGRGFTL E++A+G+   FA TIGI+VD RR+N+S+E LQ NVQRLK Y+
Sbjct: 61  QTLKYNMKSRAGRGFTLEELKAAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYK 120

Query: 445 ARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSV-ARPITEDEKNFKAYQ 618
           A+L++FP + +KV  G++  EE   ATQ++G  MP+ +   +SV    +T+D K FKAY 
Sbjct: 121 AKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEKRSVEVVKVTDDMKAFKAYA 180

Query: 619 YLRGARSIAKLVG 657
            LR  R   + +G
Sbjct: 181 KLRVERMNQRHIG 193


>03_05_0108 -
           20887146-20887370,20887460-20887618,20887930-20888063,
           20888597-20888705
          Length = 208

 Score =  190 bits (463), Expect = 8e-49
 Identities = 94/193 (48%), Positives = 129/193 (66%), Gaps = 2/193 (1%)
 Frame = +1

Query: 85  MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 264
           M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V+C
Sbjct: 1   MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60

Query: 265 PTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYR 444
            T++Y+ K RAGRGFTL E++A+G+   +A TIGI+VD RR+N+S+E LQ NVQRLK Y+
Sbjct: 61  QTLKYNMKSRAGRGFTLEELKAAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYK 120

Query: 445 ARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSV-ARPITEDEKNFKAYQ 618
           A+L++FP + +KV  G++  EE   ATQ++G  MP+ +   +SV    +T++ K FKAY 
Sbjct: 121 AKLVIFPRRARKVKAGDSTAEELATATQVQGDYMPIARGEKRSVEVVKVTDEMKAFKAYA 180

Query: 619 YLRGARSIAKLVG 657
            LR  R   + VG
Sbjct: 181 KLRVERMNQRHVG 193


>04_04_0944 -
           29557360-29557485,29557570-29557698,29557875-29557917,
           29558321-29558400,29558493-29558804
          Length = 229

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 70  GKSFKMGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNR 198
           GKS +MG GN  IP+ H  ++  R    +  +    +  KQN+
Sbjct: 183 GKSIRMGSGNRRIPSAHESREKLRNSDIFKRRLDEPNDEKQNK 225


>10_08_0694 - 19929918-19930292,19930633-19930866
          Length = 202

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +1

Query: 385 RRNKSVESLQINVQRLKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAP 564
           R N   + + + +   K     LI+ P G +VL+G   E++ K A ++   L  +++   
Sbjct: 54  RSNPVHKKIPVLLHHGKPIAESLIIIPPGIRVLRGSVEEDKDKAAGEMSTALQHLEEAFV 113

Query: 565 K 567
           K
Sbjct: 114 K 114


>02_05_0682 +
           30857876-30858106,30858187-30858399,30858867-30859067,
           30859832-30860086,30860189-30860884
          Length = 531

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 133 NPYGNGHLVSYYSLYPF*KIYHFAVSLVP 47
           NP G  +LV Y + YP  +++H A S+VP
Sbjct: 411 NPRGISYLVGYGAKYPN-RVHHRAASIVP 438


>11_01_0432 +
           3313060-3313107,3313610-3313753,3314510-3314662,
           3315283-3315792,3315888-3317423,3317505-3317573,
           3317742-3317807,3318517-3318640,3319464-3319690
          Length = 958

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = -1

Query: 660 DAHKFGNRTSSSKVLISFEVLLILS 586
           ++HK  N+T SS+ L+SF+ +L+L+
Sbjct: 579 ESHKQANKTESSQGLLSFQDVLLLT 603


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,653,073
Number of Sequences: 37544
Number of extensions: 349540
Number of successful extensions: 782
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)