Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J02
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)             208   4e-54
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)                   33   0.21 
SB_41997| Best HMM Match : RVT_1 (HMM E-Value=3)                       30   1.9  
SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8)              29   4.4  
SB_58162| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-14)         28   5.9  
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)         28   7.7  
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
          Length = 600

 Score =  208 bits (507), Expect = 4e-54
 Identities = 101/192 (52%), Positives = 132/192 (68%), Gaps = 2/192 (1%)
 Frame = +1

Query: 91  KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 270
           K NN+IPNGHFHKDWQR+VKTWF+QP R+ RR+  R               LRP+VRCPT
Sbjct: 4   KRNNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPT 63

Query: 271 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 450
            +Y+TKVRAGRGFTL E++A+G+    A TIGIAVD RR+N+S ESLQ NVQRLKEY+++
Sbjct: 64  FKYNTKVRAGRGFTLDELKAAGIPRKVAPTIGIAVDHRRKNRSAESLQANVQRLKEYKSK 123

Query: 451 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 627
           LI+FP K  K  +G++   +   A QL+GP+MP+ Q +    ARPITEDEK   + +   
Sbjct: 124 LIVFPRKANKPKQGDSEAADLANAVQLQGPVMPIPQESVPIKARPITEDEKKSASSRQCE 183

Query: 628 GARSI-AKLVGI 660
            +  +  KLVG+
Sbjct: 184 SSGEVKTKLVGL 195


>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
          Length = 440

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 367 IAVDPRRRNKSVESLQINVQRLKEYRARLILFPKGKKVLKGEANEEERKLATQ 525
           IA+  R    + +     + R++E R   ++F  GK V  G  +EE+ KLA +
Sbjct: 301 IALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSKLAAR 353


>SB_41997| Best HMM Match : RVT_1 (HMM E-Value=3)
          Length = 532

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/28 (42%), Positives = 23/28 (82%)
 Frame = -1

Query: 495 SFTLQYLLALREKNKTSSIFLQPLNINL 412
           +F+LQ L ++R + +T ++FL+P+NI+L
Sbjct: 129 TFSLQSLYSIRCQMRTRNLFLKPVNISL 156


>SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = -3

Query: 292 ELLYDNAQ*GNEQRVLEGQPQDEEQQL*PFLFYSA--FYDDDELAD*TMSS-QIFANPYG 122
           E + + AQ   E R  +   Q+EE+Q+   L  S    +DDDE++D +M S  + A P G
Sbjct: 391 ENIEEAAQKYTELRRQKEGDQEEEEQIKKVLAESRSQVHDDDEMSDESMDSMDVDARPQG 450

Query: 121 NG 116
            G
Sbjct: 451 KG 452


>SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8)
          Length = 91

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = +1

Query: 352 ARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLILFPKGKKVLKGEANEEERKLAT 522
           AR I +A+  RR   +  S+Q   +   EY  R     KG+KV KG    +ERK A+
Sbjct: 17  ARRIRLAIFSRRLKFARTSVQNRQRNQAEYSER-----KGRKVRKGRKVRKERKPAS 68


>SB_58162| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-14)
          Length = 624

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/28 (35%), Positives = 22/28 (78%)
 Frame = -1

Query: 495 SFTLQYLLALREKNKTSSIFLQPLNINL 412
           +F+ + L ++R + +T ++FL+P+NI+L
Sbjct: 101 TFSRESLYSIRRRMRTRNLFLKPVNISL 128


>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
          Length = 672

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/28 (35%), Positives = 22/28 (78%)
 Frame = -1

Query: 495 SFTLQYLLALREKNKTSSIFLQPLNINL 412
           +F+ + L ++R + +T ++FL+P+NI+L
Sbjct: 164 TFSRESLYSIRRQMRTRNLFLKPVNISL 191


>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/28 (35%), Positives = 22/28 (78%)
 Frame = -1

Query: 495 SFTLQYLLALREKNKTSSIFLQPLNINL 412
           +F+ + L ++R + +T ++FL+P+NI+L
Sbjct: 129 TFSRESLYSIRRQMRTRNLFLKPVNISL 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,924,894
Number of Sequences: 59808
Number of extensions: 397294
Number of successful extensions: 1168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)