Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J02
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 183 9e-47
U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal prote... 93 1e-19
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 31 0.72
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 31 0.72
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 31 0.72
Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z75532-6|CAA99813.2| 330|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z75530-9|CAA99797.2| 330|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical pr... 28 6.8
AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal t... 28 6.8
AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal t... 28 6.8
>U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform a protein.
Length = 207
Score = 183 bits (446), Expect = 9e-47
Identities = 89/190 (46%), Positives = 123/190 (64%), Gaps = 1/190 (0%)
Frame = +1
Query: 91 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 270
+GN M+ N HF K W + +KTWF+QPAR+ RR+QNR LR VVRCP
Sbjct: 4 RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63
Query: 271 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 450
RY+TK R GRGF+L+E++A+G++ + ARTIGIAVD RR NK+ E L+ N RLKEY+A+
Sbjct: 64 KRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAK 123
Query: 451 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 627
LILFP K KG+++ EE K+A QLRG ++P+ T R +T+ E+ + ++ LR
Sbjct: 124 LILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLR 183
Query: 628 GARSIAKLVG 657
R+ K G
Sbjct: 184 KERADKKYRG 193
>U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform b protein.
Length = 88
Score = 93.5 bits (222), Expect = 1e-19
Identities = 41/84 (48%), Positives = 54/84 (64%)
Frame = +1
Query: 91 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 270
+GN M+ N HF K W + +KTWF+QPAR+ RR+QNR LR VVRCP
Sbjct: 4 RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63
Query: 271 VRYHTKVRAGRGFTLREIRASGLN 342
RY+TK R GRGF+L+E++A+ N
Sbjct: 64 KRYNTKTRLGRGFSLQELKAAEEN 87
>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
F13B9.1c protein.
Length = 1609
Score = 31.1 bits (67), Expect = 0.72
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 454 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 609
++F K VLK + + A +GPL+P Q+AP +V IT+ +N K
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929
>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
F13B9.1b protein.
Length = 1614
Score = 31.1 bits (67), Expect = 0.72
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 454 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 609
++F K VLK + + A +GPL+P Q+AP +V IT+ +N K
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
F13B9.1a protein.
Length = 1632
Score = 31.1 bits (67), Expect = 0.72
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 454 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 609
++F K VLK + + A +GPL+P Q+AP +V IT+ +N K
Sbjct: 901 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 951
>Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical
protein W09D6.6 protein.
Length = 801
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 207 LFYSILLSTMTTSWLIKPCLHKSLPILMEMAIWYHIIPFTHFKRF 73
LF+ IL + W +P SL A+ H IP T +K++
Sbjct: 111 LFFWILSLCSFSKWRNQPSTPISLAFAFSAALLIHCIPLTDWKKY 155
>Z75532-6|CAA99813.2| 330|Caenorhabditis elegans Hypothetical
protein C47E8.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 192 LLSTMTTSWLIKPCLHKSLPILMEMAIWYH 103
LL+ + SW + P +H +LPIL I H
Sbjct: 56 LLAELLNSWFLIPVVHVNLPILRFTGILSH 85
>Z75530-9|CAA99797.2| 330|Caenorhabditis elegans Hypothetical
protein C47E8.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 192 LLSTMTTSWLIKPCLHKSLPILMEMAIWYH 103
LL+ + SW + P +H +LPIL I H
Sbjct: 56 LLAELLNSWFLIPVVHVNLPILRFTGILSH 85
>Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical
protein ZK1067.7 protein.
Length = 373
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 255 CSLPYCALSYKSSCRQRIYPT 317
CS P C S +SSC+Q PT
Sbjct: 204 CSTPICIQSCQSSCQQACQPT 224
>AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 207 LFYSILLSTMTTSWLIKPCLHKSLPILMEMAIWYHIIPFTHFKRF 73
LF+ IL + W +P SL A+ H IP T +K++
Sbjct: 111 LFFWILSLCSFSKWRNQPSTPISLAFAFSAALLIHCIPLTDWKKY 155
>AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 207 LFYSILLSTMTTSWLIKPCLHKSLPILMEMAIWYHIIPFTHFKRF 73
LF+ IL + W +P SL A+ H IP T +K++
Sbjct: 111 LFFWILSLCSFSKWRNQPSTPISLAFAFSAALLIHCIPLTDWKKY 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,760,616
Number of Sequences: 27780
Number of extensions: 294495
Number of successful extensions: 706
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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