Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J02
(660 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br... 178 3e-45
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br... 178 3e-45
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D) 174 5e-44
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ... 159 1e-39
At1g33880.1 68414.m04200 avirulence-responsive family protein / ... 29 2.1
At5g47070.1 68418.m05800 protein kinase, putative similar to pro... 29 2.7
At5g12280.1 68418.m01444 hypothetical protein 28 4.8
At1g62250.2 68414.m07023 expressed protein 28 4.8
At1g62250.1 68414.m07022 expressed protein 28 4.8
At5g08170.1 68418.m00954 porphyromonas-type peptidyl-arginine de... 28 6.3
At5g10050.1 68418.m01164 short-chain dehydrogenase/reductase (SD... 27 8.4
>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 178 bits (433), Expect = 3e-45
Identities = 87/190 (45%), Positives = 122/190 (64%), Gaps = 1/190 (0%)
Frame = +1
Query: 91 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 270
K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPVV T
Sbjct: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 271 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 450
++Y+ KVR G+GFTL E++A+G+ A TIGIAVD RR+N+S+E LQ NVQRLK Y+ +
Sbjct: 62 LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTK 121
Query: 451 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 627
L++FP + +KV G++ EE ATQ++G +P+ + P +T + K+FKA+ +R
Sbjct: 122 LVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIR 181
Query: 628 GARSIAKLVG 657
R+ + G
Sbjct: 182 LERTNKRHAG 191
>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 178 bits (433), Expect = 3e-45
Identities = 87/190 (45%), Positives = 122/190 (64%), Gaps = 1/190 (0%)
Frame = +1
Query: 91 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 270
K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPVV T
Sbjct: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 271 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 450
++Y+ KVR G+GFTL E++A+G+ A TIGIAVD RR+N+S+E LQ NVQRLK Y+ +
Sbjct: 62 LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTK 121
Query: 451 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 627
L++FP + +KV G++ EE ATQ++G +P+ + P +T + K+FKA+ +R
Sbjct: 122 LVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIR 181
Query: 628 GARSIAKLVG 657
R+ + G
Sbjct: 182 LERTNKRHAG 191
>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
Length = 206
Score = 174 bits (423), Expect = 5e-44
Identities = 87/190 (45%), Positives = 120/190 (63%), Gaps = 1/190 (0%)
Frame = +1
Query: 91 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 270
K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+ R LRPVV T
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 271 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 450
++Y+ KVRAG+GFTL E++ +G+ A TIGI+VD RR+N+S+E LQ NVQRLK Y+A+
Sbjct: 62 LKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAK 121
Query: 451 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 627
L++FP + ++V G++ EE ATQ++G MP+ +T D K FKAY +R
Sbjct: 122 LVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIR 181
Query: 628 GARSIAKLVG 657
R+ A+ G
Sbjct: 182 LERTNARHAG 191
>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
ribosomal protein L13 (BBC1), Arabidopsis thaliana,
gb:X75162
Length = 206
Score = 159 bits (387), Expect = 1e-39
Identities = 79/180 (43%), Positives = 113/180 (62%), Gaps = 1/180 (0%)
Frame = +1
Query: 91 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 270
K NN+IPNGHF K W+ +VKT FNQPA + RR+ R +RPVV T
Sbjct: 2 KHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQT 61
Query: 271 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 450
+ Y+ KVRAG+GFTL E++A+G+ A TIGI+VD R+N+S+E Q NVQRLK Y+A+
Sbjct: 62 LTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAK 121
Query: 451 LILFPKGKKVLK-GEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 627
L++FP+ + +K G++ ++E ATQ++ MP+ + P +T D K F AY +R
Sbjct: 122 LVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIR 181
>At1g33880.1 68414.m04200 avirulence-responsive family protein /
avirulence induced gene (AIG1) family protein similar to
AIG1 protein SP:P54120 [Arabidopsis thaliana]; contains
Pfam PF04548: AIG1 family;
Length = 234
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 436 EYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITED 594
E+ R++ F G+KVL +E A Q+ + V + K+ +P TED
Sbjct: 165 EFLMRVLRFCNGRKVLFNNMTNDEGVKAEQVNQVMAHVAAISKKNDEKPYTED 217
>At5g47070.1 68418.m05800 protein kinase, putative similar to
protein kinase [Lophopyrum elongatum]
gi|13022177|gb|AAK11674
Length = 410
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 466 KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQY 621
KGK++L+ A E + T P +P+S+ TE E+N + + Y
Sbjct: 25 KGKELLQNSAPELTNRSETSSFNLQTPRSLPSPRSIKDLYTEREQNLRVFSY 76
>At5g12280.1 68418.m01444 hypothetical protein
Length = 419
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 397 SVESLQINVQRLKEYRARLILFPKGKKVLKGEA 495
+V+SL NV LKE + I FP K+ L+G+A
Sbjct: 362 TVQSLSENVASLKEKISGEIQFPTNKQKLRGKA 394
>At1g62250.2 68414.m07023 expressed protein
Length = 223
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 274 RYHTKVRAGRGFTLREIRASGLNPSFARTIGIA-VDPRRRNKSVESLQINVQRLKEY 441
RY T + G G TL+E ++G+N A +G D R+ +++ + ++R++ Y
Sbjct: 98 RYRTVIGRGEGETLKEFISAGVN---AYALGCTDEDLRKELMAMKDSGLEIERMENY 151
>At1g62250.1 68414.m07022 expressed protein
Length = 267
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 274 RYHTKVRAGRGFTLREIRASGLNPSFARTIGIA-VDPRRRNKSVESLQINVQRLKEY 441
RY T + G G TL+E ++G+N A +G D R+ +++ + ++R++ Y
Sbjct: 98 RYRTVIGRGEGETLKEFISAGVN---AYALGCTDEDLRKELMAMKDSGLEIERMENY 151
>At5g08170.1 68418.m00954 porphyromonas-type peptidyl-arginine
deiminase family protein contains Pfam PF04371:
Porphyromonas-type peptidyl-arginine deiminase
Length = 383
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 1/99 (1%)
Frame = +1
Query: 130 DWQRFVKTWFNQPARRHRRKQNRI-XXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRG 306
+W +TW P R+ + N + PV C + R
Sbjct: 18 EWDSHAQTWIGWPERQDNWRHNALPAQRVFADVAKAISKFEPVTVCASPAQWENARKQLP 77
Query: 307 FTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINV 423
+R + S +N S+ R G R+R + SL N+
Sbjct: 78 EDIRVVEMS-MNDSWFRDSGPTFIVRKRPVKLSSLNRNI 115
>At5g10050.1 68418.m01164 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198 short
chain dehydrogenase/reductase SDR family
Length = 279
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 350 KEGFNPEALISRRVNPLPARTF 285
+E A IS+R+NP PA TF
Sbjct: 210 EEAIRERAFISQRMNPTPAETF 231
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,074,585
Number of Sequences: 28952
Number of extensions: 279180
Number of successful extensions: 709
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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