Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J01
(426 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 155 4e-39
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 153 8e-39
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 1.6
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 26 2.1
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 26 2.1
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 3.7
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 3.7
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po... 25 6.5
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 6.5
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 155 bits (375), Expect = 4e-39
Identities = 70/108 (64%), Positives = 80/108 (74%)
Frame = +1
Query: 10 PKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYWVAQDSSYKYFEVILI 189
PKG TYGKP GVN LK R+ + AEE NSYWV QD++YK+FEVIL+
Sbjct: 76 PKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILV 135
Query: 190 DPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRFSQT 333
DPSHKAIRRDP+INWIVN VHKHRE RGLTS GK SRG+GKGHRF+ +
Sbjct: 136 DPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRFNNS 183
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 153 bits (372), Expect = 8e-39
Identities = 69/108 (63%), Positives = 80/108 (74%)
Frame = +1
Query: 10 PKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYWVAQDSSYKYFEVILI 189
PKG TYGKP GVN LK R+ + AEE NSYWV QD++YK+FEVIL+
Sbjct: 76 PKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILV 135
Query: 190 DPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRFSQT 333
DPSHKAIRRDP+INWIVN VHKHRE RGLTS GK SRG+GKGHR++ +
Sbjct: 136 DPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRYNNS 183
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 1.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 151 QDSSYKYFEVILIDPSHKAIRRDPKINWIVNAVHK 255
+ S KY E P H + PK WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 26.2 bits (55), Expect = 2.1
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -3
Query: 421 NAESIVLFIACDAVARCCDVTRRR--DGNLPWFERSDV 314
N IVLF AV +CCD+ R GNL ++ D+
Sbjct: 153 NTTDIVLFPFVLAVIKCCDIVHREFLMGNL--YDEEDI 188
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 2.1
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 332 PREVPVAPPGYVATPCNCVASDKQ 403
P PV P GY T CV+S Q
Sbjct: 259 PESYPVPPSGYPLTSSTCVSSISQ 282
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 3.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 68 LATCSLLLRSVLVAGVVVYACLIHTG 145
L T + + V +AG+ +Y C+++TG
Sbjct: 730 LITAAAMDCGVAIAGLFIYFCVVYTG 755
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.4 bits (53), Expect = 3.7
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -1
Query: 330 LREAMSLAETTRAFPCGRQTAHLAMFVYRIHDPIDLRITANSL 202
L E + T+ FPC T+HL + + + + +I N++
Sbjct: 520 LSEEQPMELTSTVFPCENSTSHLEVEEAAMDETVAFQIRGNNV 562
>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 412
Score = 24.6 bits (51), Expect = 6.5
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 190 DPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKG-HRFSQTKGG 342
DPS+ + PK+N K + +G+ RG G+G +R + +GG
Sbjct: 329 DPSNGVVDGTPKLNSNTRGSSKRPSVNRSQGSGQRGRG-GRGFYRGGRGRGG 379
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 24.6 bits (51), Expect = 6.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 275 RPRISRCLCTAFTIQLILGSRRI 207
+P + CL ++F+ ++LGSR I
Sbjct: 815 KPFLQACLTSSFSTPVVLGSRLI 837
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,655,224
Number of Sequences: 5004
Number of extensions: 28877
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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