Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J01
(426 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 145 1e-35
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 145 1e-35
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 31 4e-04
04_01_0555 + 7152196-7153065,7154805-7154960,7155058-7155130,715... 30 0.68
01_01_0652 + 4975091-4975585 30 0.90
07_01_0886 - 7356591-7356662,7357002-7357079,7357373-7357444,735... 28 2.7
09_02_0328 - 7293547-7293855,7294161-7294274,7294348-7294429,729... 28 3.6
06_01_1010 + 7866158-7866661 27 4.8
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903 27 4.8
06_03_1126 + 27805982-27806475,27806617-27807202 27 8.3
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 27 8.3
02_03_0251 + 16849905-16851308 27 8.3
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 145 bits (352), Expect = 1e-35
Identities = 68/118 (57%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Frame = +1
Query: 10 PKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYWVAQDSSYKYFEVILI 189
PKG YGKPK G+ QLK RN +S+AEE NSYWV +DS+YKYFE+IL+
Sbjct: 181 PKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILV 240
Query: 190 DPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL-GKGHRFSQTKGGSRRAAW 360
D +H AIR DP+INW+ VHKHRE+RGLTSAGK RGL GKGH + + SRRA W
Sbjct: 241 DVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATW 297
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 145 bits (352), Expect = 1e-35
Identities = 68/118 (57%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Frame = +1
Query: 10 PKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYWVAQDSSYKYFEVILI 189
PKG YGKPK G+ QLK RN +S+AEE NSYWV +DS+YKYFE+IL+
Sbjct: 76 PKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILV 135
Query: 190 DPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL-GKGHRFSQTKGGSRRAAW 360
D +H AIR DP+INW+ VHKHRE+RGLTSAGK RGL GKGH + + SRRA W
Sbjct: 136 DVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATW 192
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 31.1 bits (67), Expect(2) = 4e-04
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 172 FEVILIDPSHKAIRRDPK 225
FE+IL+D +H AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316
Score = 29.1 bits (62), Expect(2) = 4e-04
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 13 KGATYGKPKSHGVNQLKPTRN 75
KG Y KPK G+ QLK RN
Sbjct: 272 KGIVYSKPKHQGITQLKFQRN 292
>04_01_0555 +
7152196-7153065,7154805-7154960,7155058-7155130,
7156261-7156367
Length = 401
Score = 30.3 bits (65), Expect = 0.68
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 258 SRDARSDVRREKLSWSRQGTSLLSNQGRFPSRRLVTSQHLATASQAIN 401
S A + VR KLSWSR S FP+ + +T+ HL + +N
Sbjct: 272 SLGALASVRNLKLSWSRSMDSHHGEFPNFPTFQKLTTLHLYKCNMCLN 319
>01_01_0652 + 4975091-4975585
Length = 164
Score = 29.9 bits (64), Expect = 0.90
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 280 SAGKSSRGLGKGHRFSQTKGGSRRAAW 360
+AGK GKG R + +GG RR W
Sbjct: 37 AAGKRREAAGKGGRQREARGGGRRMRW 63
>07_01_0886 -
7356591-7356662,7357002-7357079,7357373-7357444,
7357511-7357600,7357669-7357783,7358509-7358639,
7358717-7358992,7360147-7360283,7360368-7360502,
7360958-7361325,7362111-7362229,7362295-7362339
Length = 545
Score = 28.3 bits (60), Expect = 2.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 358 RRRDGNLPWFERSDVPCRDHESF 290
R R G++ W E SD+ RDH F
Sbjct: 331 RARRGDIQWLEESDILGRDHYMF 353
>09_02_0328 -
7293547-7293855,7294161-7294274,7294348-7294429,
7295318-7295401,7296199-7296399,7296516-7296853,
7296968-7297084
Length = 414
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 271 GLTSAGKSSRGLGKGHRFSQTKGGSRRAA 357
G++ +G G G+G KGGSR AA
Sbjct: 174 GVSGSGAGGGGRGRGRGSDDAKGGSRAAA 202
>06_01_1010 + 7866158-7866661
Length = 167
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 259 REMRGLTSAGKSSRGLGKGHRFSQTKGGSRR 351
R+ G+ G + G GKG R+ GG RR
Sbjct: 57 RKEAGMPGGGARAPGSGKGRRWRPEHGGKRR 87
>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
Length = 405
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 220 PKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRFSQTKGGSRRA 354
P+++ VH+ RG ++AG R G S G SRRA
Sbjct: 264 PRVSGTKRPVHRGLGPRGWSTAGPRDRRSGSASGRSDGAGSSRRA 308
>06_03_1126 + 27805982-27806475,27806617-27807202
Length = 359
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +1
Query: 250 HKHREMRGLTSAGKSSRGLGKGHRFSQTKGGSRRA 354
H HR G + GH F +T+ G RRA
Sbjct: 231 HHHRGGGGFCCFTSNPETTSNGHSFRRTRAGGRRA 265
>02_04_0481 + 23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 26.6 bits (56), Expect = 8.3
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +3
Query: 225 DQLDRECGTQTSRDARSDVRREKLSWSRQGTSLLSNQGRFPSRRLVTSQHLATASQAINK 404
++LDR G S DV EKLS SLLS +++ T + +A +++ +
Sbjct: 1084 EELDRSHGNLQSHSTEHDVYLEKLSTLVMDNSLLSLMTEEFGKKVSTLREMALIVRSMRE 1143
Query: 405 TM 410
+
Sbjct: 1144 QL 1145
>02_03_0251 + 16849905-16851308
Length = 467
Score = 26.6 bits (56), Expect = 8.3
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = -3
Query: 403 LFIACDAVARCCDVTRRRDGNL--PWFERSDVPCRDHESFSLRTSDR 269
+F AC AVA D R + W ER CRD FS+ S R
Sbjct: 350 VFTACAAVAAAIDEAVRGEPAYWEGWKERIVEACRDDAPFSVAGSTR 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,785,108
Number of Sequences: 37544
Number of extensions: 229199
Number of successful extensions: 766
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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