Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J01
         (426 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)             157   3e-39
SB_13929| Best HMM Match : VKOR (HMM E-Value=0.65)                     28   2.8  
SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)                 27   4.9  
SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20)                  27   4.9  
SB_30971| Best HMM Match : Y_Y_Y (HMM E-Value=0.28)                    27   6.5  
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)                        27   6.5  
SB_21688| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score =  157 bits (382), Expect = 3e-39
 Identities = 70/117 (59%), Positives = 85/117 (72%)
 Frame = +1

Query: 10  PKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYWVAQDSSYKYFEVILI 189
           PKGATYGKP + GVN+LK  R+L+S+AEE            NSYWV QDS YKYFEVI++
Sbjct: 76  PKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYWVGQDSIYKYFEVIMV 135

Query: 190 DPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRFSQTKGGSRRAAW 360
           DP HKAIRRD +INWI    HKHRE+RGLT+AG  +RG+ KGH +++  G SRRA W
Sbjct: 136 DPFHKAIRRDARINWICKPTHKHRELRGLTAAGTKNRGMRKGHNYNKVIGSSRRANW 192


>SB_13929| Best HMM Match : VKOR (HMM E-Value=0.65)
          Length = 498

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 18  SYLRQTQEPWCQPTETHSQPAVYC*GACWSPVWWS 122
           S+LR T    CQP+++   P  +  G C S  WWS
Sbjct: 343 SFLRGTSFNICQPSQSMLNPIKHEGGLC-STQWWS 376


>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
          Length = 300

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 247 VHKHREMRGLTSAGKSSRGLGKGHRFSQTK 336
           +H  + ++GLT A  S   LG GH +S+ K
Sbjct: 61  MHFDKMIKGLTGAMASKAQLGLGHSYSRAK 90


>SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20)
          Length = 645

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 380 CKVLRRNQAARREPPLV*EKRCPLPRPRELFPADVRP--RISRC 255
           C+ +  N+ A  +PPL   K C +  PR+   +  +P  RI  C
Sbjct: 490 CRTMHCNECAPSQPPLCQIKDCEVCTPRQWVKSPRKPGGRIEGC 533


>SB_30971| Best HMM Match : Y_Y_Y (HMM E-Value=0.28)
          Length = 290

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 29  ANPRAMVSTN*NPLATCSLLLRSVLVAGVVV 121
           +N +  V TN NP+A C+L L  +LV   VV
Sbjct: 78  SNYKLKVHTNGNPVANCNLPLSGMLVNDDVV 108


>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2681

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 308  PRPRELFPADVRPRISRCLCTAFTIQLI 225
            PRP  + PA   P +  CL    T+QL+
Sbjct: 1638 PRPDMVVPAVRDPTVKSCLAACLTVQLM 1665


>SB_21688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1078

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 418  AESIVLFIACDAVARCCDVTRRRDGNLPWFERSDVPCRDHESFSLR 281
            A+S V  +ACD+V R   +    DG++  ++R  +P  D    +LR
Sbjct: 972  ADSCVTSLACDSVGRSLLIAGCGDGSVRLYDRR-LPPSDSRVMALR 1016


>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 3   TRAQGSYLRQTQEPWCQPTETHS 71
           T A   Y  +TQ  WC PT+T +
Sbjct: 312 THANWCYPTKTQANWCHPTKTQA 334


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,436,785
Number of Sequences: 59808
Number of extensions: 260223
Number of successful extensions: 725
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)