Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J01
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   159   1e-39
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    30   0.60 
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    30   0.60 
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AC024757-4|AAK68429.2|  371|Caenorhabditis elegans Methionine am...    28   3.2  
Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  159 bits (385), Expect = 1e-39
 Identities = 70/116 (60%), Positives = 85/116 (73%)
 Frame = +1

Query: 13  KGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYWVAQDSSYKYFEVILID 192
           KG TYGKPK+HGVN+LK  ++ Q++AE             NSYWVA+DS+YK++EV+LID
Sbjct: 77  KGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYWVAEDSTYKFYEVVLID 136

Query: 193 PSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRFSQTKGGSRRAAW 360
           P HKAIRR+P   WI   VHKHRE RGLTSAG+ SRGLGKG RFS T+GGS+   W
Sbjct: 137 PFHKAIRRNPDTQWITKPVHKHREQRGLTSAGRKSRGLGKGWRFSATRGGSQAKNW 192


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
           protein 1 protein.
          Length = 4568

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 154 DSSYKYFEVILIDPSHKAIRRDP-KINWIVNAVHKHREMR 270
           D  Y  F  +L D + K  R DP K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
           protein.
          Length = 4568

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 154 DSSYKYFEVILIDPSHKAIRRDP-KINWIVNAVHKHREMR 270
           D  Y  F  +L D + K  R DP K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458


>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical
           protein T16G12.1 protein.
          Length = 1890

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 45  WCQPTETHSQPAVYC*GACWSP 110
           WC P  T+ + A+YC  A ++P
Sbjct: 807 WCNPYSTNLRKAIYCGAAKYAP 828


>AC024757-4|AAK68429.2|  371|Caenorhabditis elegans Methionine
           aminopeptidase protein 1 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 370 CDVTRRRDGNLPWF 329
           C++  +RDGN PWF
Sbjct: 350 CEILTKRDGNRPWF 363


>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical
           protein K12D12.1 protein.
          Length = 1520

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +1

Query: 163 YKYFEVILIDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGK 291
           YK ++ IL++ +    +RDPK+N I   ++K +    + + GK
Sbjct: 117 YKIYDEILVNAADNK-QRDPKMNTIKITINKEKNEISVYNNGK 158


>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical
           protein K12D12.1 protein.
          Length = 1520

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +1

Query: 163 YKYFEVILIDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGK 291
           YK ++ IL++ +    +RDPK+N I   ++K +    + + GK
Sbjct: 117 YKIYDEILVNAADNK-QRDPKMNTIKITINKEKNEISVYNNGK 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,445,814
Number of Sequences: 27780
Number of extensions: 176726
Number of successful extensions: 535
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)