Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J01
         (426 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           23   1.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.9  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   2.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   2.5  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 274 LTSAGKSSRGLGKG 315
           +T  GK  +GLGKG
Sbjct: 1   MTGRGKGGKGLGKG 14


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +2

Query: 197 RTRLFAVILRSIGS*MRYTNIARCAV*RPQGKALVVSARDIASLKPREVPVAPP 358
           RTRL   +L      +    I RC+   P G+A     R I +  P  V V PP
Sbjct: 287 RTRLLGSVLALEAVTLEDNGIYRCSASNPGGEA-SAEIRLIVT-APLHVEVTPP 338


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +2

Query: 197 RTRLFAVILRSIGS*MRYTNIARCAV*RPQGKALVVSARDIASLKPREVPVAPP 358
           RTRL   +L      +    I RC+   P G+A     R I +  P  V V PP
Sbjct: 287 RTRLLGSVLALEAVTLEDNGIYRCSASNPGGEA-SAEIRLIVT-APLHVEVTPP 338


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 234 DRECGTQTSRDARSDVRREKL 296
           +R C    +R+ R D R EKL
Sbjct: 1   ERSCSRDRNREYRKDRRYEKL 21


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 234 DRECGTQTSRDARSDVRREKL 296
           +R C    +R+ R D R EKL
Sbjct: 1   ERSCSRDRNREYRKDRRYEKL 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,407
Number of Sequences: 438
Number of extensions: 2737
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)