Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J01
         (426 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)           145   1e-35
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)           145   1e-35
At1g12580.1 68414.m01461 protein kinase family protein contains ...    29   1.7  
At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloropl...    28   2.3  
At1g59722.1 68414.m06722 hypothetical protein                          27   4.0  
At5g51670.1 68418.m06406 expressed protein contains Pfam domain ...    26   9.3  

>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score =  145 bits (351), Expect = 1e-35
 Identities = 66/118 (55%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
 Frame = +1

Query: 10  PKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYWVAQDSSYKYFEVILI 189
           PKG  YGKP + GV QLK  R+ +S+AEE            NSYW+ +DS+YKY+E+IL+
Sbjct: 76  PKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILV 135

Query: 190 DPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL-GKGHRFSQTKGGSRRAAW 360
           DP+H A+R DP+INWI N VHKHRE+RGLTS GK +RGL GKGH   + +  SRRA W
Sbjct: 136 DPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNR-PSRRATW 192


>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score =  145 bits (351), Expect = 1e-35
 Identities = 66/118 (55%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
 Frame = +1

Query: 10  PKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYWVAQDSSYKYFEVILI 189
           PKG  YGKP + GV QLK  R+ +S+AEE            NSYW+ +DS+YKY+E+IL+
Sbjct: 76  PKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILV 135

Query: 190 DPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL-GKGHRFSQTKGGSRRAAW 360
           DP+H A+R DP+INWI N VHKHRE+RGLTS GK +RGL GKGH   + +  SRRA W
Sbjct: 136 DPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNR-PSRRATW 192


>At1g12580.1 68414.m01461 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains similarity
           to calcium-dependent protein kinase GI:5162877 from
           [Marchantia polymorpha]
          Length = 522

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +3

Query: 210 SP*S*DQLDR--ECG-TQTSRDARSDVRREKLSWSRQGTSLLSNQGR 341
           SP S  QL+R  E G  QT    +S+ RRE+ +WSR  + L S + R
Sbjct: 436 SPDSSSQLERRDEAGENQTEAGGKSETRRERGNWSRM-SGLHSKRNR 481


>At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloroplast
           (FAD7) (FADD) identical to omega-3 fatty acid
           desaturase, chloroplast precursor SP:P46310 [Arabidopsis
           thaliana (Mouse-ear cress)]; identical to Pfam profile
           PF00487: Fatty acid desaturase; identical to cDNA
           plastid fatty acid desaturase GI:809491
          Length = 446

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 139 YWVAQDSSYKYFEVILIDPSHKAIRRDPKINWIV 240
           YW+AQ + +    V+  D  H +   DPK+N +V
Sbjct: 147 YWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVV 180


>At1g59722.1 68414.m06722 hypothetical protein
          Length = 156

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 75  VASGFQLVDTMALGFAVG 22
           VA+GF L+D   LGF+VG
Sbjct: 55  VAAGFSLMDPFTLGFSVG 72


>At5g51670.1 68418.m06406 expressed protein contains Pfam domain
           PF05003: protein of unknown function (DUF668)
          Length = 474

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 321 LLSNQGRFPSRRLVTSQHLATASQAINKTM 410
           L  N  R+ S R    QH+ATA+ + N+ M
Sbjct: 395 LAQNMIRWQSERSFEQQHMATATNSQNRVM 424


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,087,353
Number of Sequences: 28952
Number of extensions: 168437
Number of successful extensions: 472
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)