Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I24
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   3.7  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    25   4.8  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   4.8  
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    25   4.8  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   6.4  

>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 191  NKYLHWINEHSSNFRLFFNSSPFQI*MLTKYNVDTQVR 78
            N+YLH +NE +S  R+   S+ F+     K N+  +VR
Sbjct: 939  NEYLHQLNEWNSELRIDV-STKFKCIKEKKSNIGEEVR 975


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 380 KRNI*KNFLHNHYSEHPVIKKNASLDPSPHQIKFT 276
           K+N+  +FL   + +  + +K  S  PS H+I  T
Sbjct: 111 KKNVENDFLLQRFRKVRIAEKKDSEQPSSHEIHLT 145


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 212  ITIYNNKNKYLHWINEHSSNFRLFFNS 132
            + ++N     L WINEH + ++L  N+
Sbjct: 1291 VILFNVAENELGWINEHMAKYKLDNNA 1317


>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 441 KGSKNQNVAYGC 476
           +G KNQNV YGC
Sbjct: 334 EGIKNQNVCYGC 345


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 5   EETVNVV*VIYIFGSVLAYVDVATRGLVCP 94
           ++T N+  +    GS+L+Y+D    G+ CP
Sbjct: 425 KDTWNLNVIASTNGSLLSYIDNPVSGITCP 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,204,356
Number of Sequences: 5004
Number of extensions: 46610
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)