Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I24
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1823 - 40140405-40140965,40141305-40141803,40143830-40143960     30   0.91 
07_03_0154 + 14509979-14512033                                         30   1.2  
08_01_0844 - 8283858-8284409,8284883-8284963                           27   6.4  
12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837           27   8.5  
05_03_0414 + 13650483-13651388,13651559-13651657                       27   8.5  
04_01_0600 + 7907142-7908047,7908218-7908316                           27   8.5  

>01_06_1823 - 40140405-40140965,40141305-40141803,40143830-40143960
          Length = 396

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -2

Query: 339 GAPSHKKECKFRPLTPPNQVYVILD*SLIPQSIYIYSS 226
           GA S K E K +P  PP +V+V +  S+ PQ I I+ S
Sbjct: 39  GAVSTKVENK-KPFAPPREVHVQVTHSMPPQKIEIFKS 75


>07_03_0154 + 14509979-14512033
          Length = 684

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 371 CFFSKLCQHTVIVEYMSFPHYN 436
           C+FS  C   V V+++ F HYN
Sbjct: 627 CYFSHSCSPNVFVQFVLFDHYN 648


>08_01_0844 - 8283858-8284409,8284883-8284963
          Length = 210

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 4   RGNS*CCLSNIYIRKCPSIRRRGHARTCVST 96
           RG   C + N Y R+CP  R  G   T VS+
Sbjct: 40  RGPYDCSIFNFYSRRCPPNRGHGGDLTAVSS 70


>12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837
          Length = 364

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 327 HKKECKFRPLTPPN 286
           HK +C FRP+T PN
Sbjct: 213 HKAQCSFRPVTCPN 226


>05_03_0414 + 13650483-13651388,13651559-13651657
          Length = 334

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 327 HKKECKFRPLTPPN 286
           HK +C FRP+T PN
Sbjct: 184 HKAQCSFRPVTCPN 197


>04_01_0600 + 7907142-7908047,7908218-7908316
          Length = 334

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 327 HKKECKFRPLTPPN 286
           HK +C FRP+T PN
Sbjct: 184 HKAQCSFRPVTCPN 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,934,397
Number of Sequences: 37544
Number of extensions: 245018
Number of successful extensions: 423
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)