Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I24
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75952-4|CAB00094.2|  303|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AC024812-8|AAF59557.4|  912|Caenorhabditis elegans Hypothetical ...    27   5.8  

>Z75952-4|CAB00094.2|  303|Caenorhabditis elegans Hypothetical
           protein F29D10.3 protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -1

Query: 187 NIYIGSTNTHRIFDYFLIRRHFKFKC*LSTMWTHKSARGHVDVC*DTSEYIYYSNNI 17
           N+   S N   IFDY + R         S +WT  +++G   VC +T  +   +NN+
Sbjct: 150 NLTFTSFNNQWIFDYTVTRCPDN-----SALWTRNTSKGIFHVCVETRLFPNNTNNV 201


>Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical
           protein Y6G8.4 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/54 (22%), Positives = 30/54 (55%)
 Frame = +3

Query: 330 WVLRIVIM*EVFLYVSFQNYVNTLSSWSI*AFPIITDKGSKNQNVAYGCLLLIL 491
           W+L ++++   ++ + F  YV+ ++     +FP+I  +  K   +AY C  +++
Sbjct: 22  WILLMMLL--SYISLPFYIYVHKINKQREESFPLIMKQFYKMVKIAYFCFFMVI 73


>AC024812-8|AAF59557.4|  912|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.1 protein.
          Length = 912

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -3

Query: 362 NFLHNHYSEHPV---IKKNASLDPSPHQIKFT*YLIDPLSRNQFIYIVVISR*ITIYNNK 192
           +FLHN  S+  +   +  +  + P    + FT Y    LS  Q IYI++    I+I  N 
Sbjct: 433 SFLHNSTSKENLSLLVPHHLFIIPLACSLLFTAYC--SLSMTQTIYIILPIYLISILENH 490

Query: 191 NKYLHWINEH 162
           +K    I EH
Sbjct: 491 SKLTQRIREH 500


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,923,816
Number of Sequences: 27780
Number of extensions: 250286
Number of successful extensions: 438
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)