Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I24
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   1.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   1.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   3.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   5.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.5  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 254 SRNQFIYIVVISR*ITIYNNKNKYLHWINEHSSN 153
           S N  +Y+V     + IY N +   H ++ H+ N
Sbjct: 197 STNTMVYMVDNKNTLIIYQNADDSFHRLSSHTLN 230


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 203 YNNKNKYLHWINEHSSNFRLF 141
           YN K+ YLH I   +   RL+
Sbjct: 93  YNGKHSYLHTITSPNKFVRLY 113


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 216 PRNYYYIYKLIAG*GI 263
           P+N+YYI + + G G+
Sbjct: 410 PQNFYYIEEYLPGNGV 425


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 200 NNKNKYLHWINEHSSNFRL 144
           N+KN +LH + E +   RL
Sbjct: 125 NDKNSFLHDVTERNKLVRL 143


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 450 WTPYQL*WGKLIYSTMTV 397
           WT YQL W +  Y  + V
Sbjct: 83  WTDYQLQWDEADYGGIGV 100


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 130 DELKNNRKFDECSLIQ 177
           D  K+N K D+CS  Q
Sbjct: 142 DSYKSNLKCDKCSTYQ 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,244
Number of Sequences: 438
Number of extensions: 3207
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)