Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I24
         (502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43710.1 68415.m05433 acyl-[acyl-carrier-protein] desaturase ...    28   3.1  
At2g43710.2 68415.m05434 acyl-[acyl-carrier-protein] desaturase ...    28   4.1  
At4g10780.1 68417.m01758 disease resistance protein (CC-NBS-LRR ...    27   5.4  
At5g03190.1 68418.m00267 expressed protein                             27   7.1  
At5g12235.1 68418.m01436 CLE22, putative CLAVATA3/ESR-Related 22...    27   9.4  
At3g01870.1 68416.m00132 hypothetical protein                          27   9.4  

>At2g43710.1 68415.m05433 acyl-[acyl-carrier-protein] desaturase /
           stearoyl-ACP desaturase (SSI2) identical to gi:15149310;
           contains Pfam profile PF03405:  Fatty acid desaturase;
           identical to cDNA stearoyl ACP desaturase (SSI2),
           SSI2-FAB2 allele, GI:15149309
          Length = 401

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 348 SLFGAPSHKKECKFRPLTPPNQVYVILD*SLIPQSIYIYSS 226
           +L   P   +  K +P TPP +V+V +  S+ PQ I I+ S
Sbjct: 41  ALSSGPKEVESLK-KPFTPPREVHVQVLHSMPPQKIEIFKS 80


>At2g43710.2 68415.m05434 acyl-[acyl-carrier-protein] desaturase /
           stearoyl-ACP desaturase (SSI2) identical to gi:15149310;
           contains Pfam profile PF03405:  Fatty acid desaturase;
           identical to cDNA stearoyl ACP desaturase (SSI2),
           SSI2-FAB2 allele, GI:15149309
          Length = 401

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 348 SLFGAPSHKKECKFRPLTPPNQVYVILD*SLIPQSIYIYSS 226
           +L   P   +  K +P TPP +V+V +  S+ PQ I I+ S
Sbjct: 41  ALSSGPKSVESLK-KPFTPPREVHVQVLHSMPPQKIEIFKS 80


>At4g10780.1 68417.m01758 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 892

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 22  CLSNIYIRKCPSIRR 66
           CLS IY+ +CP +R+
Sbjct: 829 CLSGIYVERCPKLRK 843


>At5g03190.1 68418.m00267 expressed protein
          Length = 451

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 199 ITKINIYIGSTNTHRIFDYFLI 134
           I K+NI+ GSTN H +F   +I
Sbjct: 5   ILKLNIFRGSTNRHALFRALII 26


>At5g12235.1 68418.m01436 CLE22, putative CLAVATA3/ESR-Related 22
           (CLE22)
          Length = 103

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 350 NHYSEHPVIKKNASLDPSPHQI 285
           +H+S H  +KK+ +LDP  H +
Sbjct: 42  HHHSTHGSLKKSGNLDPKLHDL 63


>At3g01870.1 68416.m00132 hypothetical protein
          Length = 583

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 101 YNVDTQVRAWPRRRMLGHFRIYILLK 24
           Y  D   + W +R  LGH ++Y+ +K
Sbjct: 352 YPADKNAKEWVKRGDLGHTKVYLHIK 377


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,942,249
Number of Sequences: 28952
Number of extensions: 218676
Number of successful extensions: 385
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)