Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I23
         (170 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   1.8  
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    23   5.4  
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   7.1  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    22   9.4  
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    22   9.4  

>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 167  NVIFF*LLYMYVCMLYVPLDTERHLS 90
            +++FF LL  +V M+ VPL  ++ LS
Sbjct: 1770 SLLFFALLCTFVAMIVVPLVLDQKLS 1795


>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 133 YVCYTCRSTPSDTCLINS 80
           ++C  C  TPS T ++NS
Sbjct: 201 FLCLHCPLTPSTTHIVNS 218


>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 163 LFFSNCYICMYVCYTCRSTPS 101
           L F N  + +  CY   +TPS
Sbjct: 156 LLFKNSLVLLAACYFMNTTPS 176


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 148 CYICMYVCYTCRSTPSDTC 92
           C IC+  C+ C S     C
Sbjct: 84  CAICIRQCHKCESNVCSMC 102


>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 126 VIRAARHRATPV 91
           V +AARH ATPV
Sbjct: 296 VAQAARHHATPV 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,192
Number of Sequences: 5004
Number of extensions: 4058
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 37
effective length of database: 2,177,330
effective search space used: 41369270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)