Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I23
         (170 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0795 - 6187518-6188219                                           28   0.93 
11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657     27   2.1  
01_01_0909 - 7163886-7163931,7164148-7164254,7164370-7164435,716...    27   2.1  
11_04_0255 - 15422536-15422640,15422734-15422790,15422917-154230...    27   2.8  

>01_01_0795 - 6187518-6188219
          Length = 233

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 159 FFLIVIYVCMYVIRAARHR 103
           FFLI I++C+  +R AR R
Sbjct: 45  FFLITIFICLRALRVARRR 63


>11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657
          Length = 922

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 146 LYMYVCMLYVPLDTERHLSNKQCV 75
           LY+  CML++ +  E HL  K C+
Sbjct: 417 LYLKTCMLHLSIYPEDHLIEKDCL 440


>01_01_0909 -
           7163886-7163931,7164148-7164254,7164370-7164435,
           7164720-7164784,7164937-7165000,7165685-7165794,
           7165972-7166059,7166100-7166297
          Length = 247

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 139 CMYVCYTCRSTPSDTC 92
           CM +CYTC   P+  C
Sbjct: 25  CMLICYTCNKFPTVEC 40


>11_04_0255 -
           15422536-15422640,15422734-15422790,15422917-15423013,
           15423155-15423222,15423299-15423344,15423467-15423621,
           15423767-15423995,15424124-15424200,15425804-15425856,
           15426082-15426139
          Length = 314

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 166 MLFFSNCYICMYVCYTCRSTPSDTCLI 86
           ++ F  C++C+YV  T   TP +T ++
Sbjct: 201 LVAFIMCHLCLYVYMTVDGTPDNTGVV 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,641
Number of Sequences: 37544
Number of extensions: 22127
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 268835280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)