Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I23
         (170 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      27   3.1  
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  

>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 148 CYICMYVCYTCR 113
           CY C  VCY+CR
Sbjct: 178 CYSCRVVCYSCR 189



 Score = 26.6 bits (56), Expect = 3.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 148 CYICMYVCYTCR 113
           CY C  VCY+CR
Sbjct: 220 CYSCRVVCYSCR 231


>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3213

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 82  CLLDRCRSVSSGTYNIHTYIYN 147
           CL D+ RSV    + +H +IY+
Sbjct: 832 CLTDKRRSVLEDAFALHQFIYD 853


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,294,519
Number of Sequences: 59808
Number of extensions: 32174
Number of successful extensions: 168
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 16,821,457
effective HSP length: 36
effective length of database: 14,668,369
effective search space used: 293367380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)