Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I23
         (170 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41542-9|AAK39150.3|  542|Caenorhabditis elegans Nuclear hormone...    25   7.2  
Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kina...    25   9.5  
AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascul...    25   9.5  

>U41542-9|AAK39150.3|  542|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 35, isoform a protein.
          Length = 542

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 151 NCYICMYVCYTCRSTP 104
           +C++C+ V ++ RSTP
Sbjct: 20  DCFVCLLVLFSFRSTP 35


>Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical
           protein C14B4.2 protein.
          Length = 1776

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 111 ERHV*HTYIHI*QLEKNN 164
           + HV H +IHI QL +NN
Sbjct: 865 QNHVKHLFIHIGQLLQNN 882


>Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical
           protein C14B4.2 protein.
          Length = 1776

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 111 ERHV*HTYIHI*QLEKNN 164
           + HV H +IHI QL +NN
Sbjct: 865 QNHVKHLFIHIGQLLQNN 882


>AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kinase
            receptor T17A3.1 protein.
          Length = 1083

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 142  ICMYVCYTCRSTPSDTCLINSV 77
            IC+Y  +T   TP  TC+  ++
Sbjct: 1006 ICLYEIFTLGGTPYPTCVTENI 1027


>AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascular
            endothelial growthfactor) receptor family protein 1
            protein.
          Length = 1083

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 142  ICMYVCYTCRSTPSDTCLINSV 77
            IC+Y  +T   TP  TC+  ++
Sbjct: 1006 ICLYEIFTLGGTPYPTCVTENI 1027


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,744
Number of Sequences: 27780
Number of extensions: 25515
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 12,740,198
effective HSP length: 37
effective length of database: 11,712,338
effective search space used: 222534422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)