Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I23
         (170 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   4.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    19   4.2  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    19   4.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    19   7.3  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    18   9.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    18   9.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    18   9.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    18   9.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -2

Query: 136  MYVCYTCRSTPSDTCLINSV 77
            +Y CY C S   +  +++S+
Sbjct: 1065 LYDCYVCYSPNDEDFVLHSL 1084


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 154 SNCYICMYVCYTCRSTPSDTCL 89
           +NC I MY+   C+      CL
Sbjct: 227 NNCEIDMYMRRKCQECRLKKCL 248


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 154 SNCYICMYVCYTCRSTPSDTCL 89
           +NC I MY+   C+      CL
Sbjct: 24  NNCEIDMYMRRKCQECRLKKCL 45


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 121 YNIHTYIYNN*KKITF 168
           YN +   YNN KK+ +
Sbjct: 104 YNYNNNNYNNYKKLYY 119


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 121 YNIHTYIYNN*KKITF 168
           YN + Y  NN KK+ +
Sbjct: 97  YNNNNYNNNNYKKLQY 112


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 121 YNIHTYIYNN*KKITF 168
           YN + Y  NN KK+ +
Sbjct: 97  YNNNNYNNNNYKKLQY 112


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 121 YNIHTYIYNN*KKITF 168
           YN + Y  NN KK+ +
Sbjct: 97  YNNNNYNNNNYKKLQY 112


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 121 YNIHTYIYNN*KKITF 168
           YN + Y  NN KK+ +
Sbjct: 97  YNNNNYNNNNYKKLQY 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,547
Number of Sequences: 438
Number of extensions: 339
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 36
effective length of database: 130,575
effective search space used:  2611500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)