Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I22
(562 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 53 3e-08
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.4
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po... 27 1.9
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 26 4.4
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 26 4.4
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 26 4.4
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 5.8
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 25 5.8
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 25 5.8
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 25 5.8
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.6
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 25 7.6
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 53.2 bits (122), Expect = 3e-08
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Frame = +3
Query: 240 KKNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADPTIAAIVLTGNEKAFAAGADIK-- 413
K + LNRPK LNA+ + + + + I+L GN ++F++G DIK
Sbjct: 63 KNGARIFTLNRPKVLNAINVDMIDSILPKLVSLEESNLAKVIILKGNGRSFSSGGDIKAA 122
Query: 414 --EMQNNTYSDNTKQGFLREWE---DISNCGKPIIAAVNGFALGGGCELAM 551
+Q+ + + F +E+ ++ KP++A +NG +GGG LAM
Sbjct: 123 ALSIQDGKLPE-VRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGLAM 172
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = -1
Query: 406 SAPAAKAFSLPVSTIAAMVGSASKSLTALPSSTNSGLQRAFSALGRFSCIRPTFFL 239
S+P++ + S T S S + SSTN+ + + S + + I+PT ++
Sbjct: 76 SSPSSTSTSSSSGTSVITASDVSASNEIISSSTNNSIHQQVSVVTEYVTIQPTTYV 131
>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 27.1 bits (57), Expect = 1.9
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -3
Query: 302 WFAESVQCFGAIQLYKAYIFFEPTTSILIFSY-TGAAL*NLTKTVLETAAILVLQNNFFP 126
W+ S+ F A+ L + IFF T + Y T A +L+ T+ I+ + + F
Sbjct: 345 WYGASISIFFALILLRTAIFFFGTDRYSLPLYKTHARRFSLSTTIHLFKKIVRITLSTFI 404
Query: 125 SKTLVTALTEAIVNLIII 72
S T + L +N+ II
Sbjct: 405 SYTWIPFLLFIFLNIFII 422
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 231 GRFKKNVGLIQLNRPKALNALCKPLFVELGKAVNDFD 341
GR N+G+ K+L LC V+L K+ ND D
Sbjct: 210 GRVYANIGVSSNTNTKSLFGLCVHNPVDLNKSDNDKD 246
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -1
Query: 427 LFCISLISAPAAKAFSLPVSTIAAMVGSASKSLTALPSSTN 305
L+ + ++AP S+PVST S+S+ T+ P++++
Sbjct: 115 LYTMDNVTAPVWSNTSVPVSTPETSATSSSEFFTSYPATSS 155
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 439 TIQNKDSYASGRTSPTVGSPSSLPST 516
T Q K+SY T+PTV P PST
Sbjct: 143 TKQPKESYDVWETNPTVTIPVKRPST 168
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 457 SYASGRTSPTVGSPSSLPSTDL 522
S ++ TSP G+P++ PSTD+
Sbjct: 236 SASNTNTSPANGAPTNKPSTDI 257
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 411 KEMQNNTYSDNTKQGFLRE-WEDISNCGKPIIAAVNG 518
K M+++ S N K F ++ WED+ +C K + NG
Sbjct: 304 KYMKSDKSSKNFKPPFQKKSWEDLVDCVKTVQQLDNG 340
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 448 NKDSYASGRTSPTVGSPSSLPSTDLL 525
NK++ A TSPT G P S PS +L
Sbjct: 388 NKNAAADRTTSPTQGQPES-PSKSIL 412
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 5.8
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 472 SHSRKNPCFVLSLYVL 425
+H+ NPCFVL+L V+
Sbjct: 225 NHTDTNPCFVLALQVI 240
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 25.0 bits (52), Expect = 7.6
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +3
Query: 423 NNTYSD--NTK-QGFLREWEDISNCGKPIIAAV 512
NNT+ + N K +G+++E E +SN K + AAV
Sbjct: 85 NNTFQNPCNRKIEGYIKEIERLSNSNKNLQAAV 117
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 454 DSYASGRTSPTVGSPSSLPSTDLLWXXXXSWL 549
+++ S +SP +G P SL + W WL
Sbjct: 72 ETFESAFSSPALGRPLSLGAVAAYWIQQGVWL 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,024
Number of Sequences: 5004
Number of extensions: 47446
Number of successful extensions: 151
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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