Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I22
(562 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g16210.1 68417.m02460 enoyl-CoA hydratase/isomerase family pr... 81 4e-16
At5g43280.1 68418.m05290 enoyl-CoA hydratase/isomerase family pr... 66 2e-11
At1g60550.1 68414.m06816 naphthoate synthase, putative / dihydro... 64 5e-11
At2g30660.1 68415.m03739 3-hydroxyisobutyryl-coenzyme A hydrolas... 61 4e-10
At5g65940.1 68418.m08301 3-hydroxyisobutyryl-coenzyme A hydrolas... 55 3e-08
At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fat... 55 3e-08
At2g30650.1 68415.m03738 3-hydroxyisobutyryl-coenzyme A hydrolas... 54 9e-08
At3g60510.1 68416.m06768 enoyl-CoA hydratase/isomerase family pr... 53 1e-07
At4g13360.1 68417.m02089 enoyl-CoA hydratase/isomerase family pr... 52 3e-07
At3g24360.1 68416.m03058 enoyl-CoA hydratase/isomerase family pr... 51 5e-07
At4g31810.1 68417.m04521 enoyl-CoA hydratase/isomerase family pr... 49 2e-06
At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family pr... 49 2e-06
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP... 47 7e-06
At4g16800.1 68417.m02537 enoyl-CoA hydratase, putative similar t... 44 9e-05
At1g65520.1 68414.m07434 enoyl-CoA hydratase/isomerase family pr... 39 0.002
At4g23490.1 68417.m03384 fringe-related protein + weak similari... 30 0.92
At3g54050.1 68416.m05976 fructose-1,6-bisphosphatase, putative /... 28 3.7
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden... 27 6.5
At2g28360.1 68415.m03447 SIT4 phosphatase-associated family prot... 27 6.5
At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related prot... 27 6.5
At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc f... 27 6.5
At5g14770.1 68418.m01733 pentatricopeptide (PPR) repeat-containi... 27 8.6
At2g40000.1 68415.m04915 expressed protein 27 8.6
>At4g16210.1 68417.m02460 enoyl-CoA hydratase/isomerase family
protein similar to 3-hydroxybutyryl-CoA dehydratase
(Crotonase) from Clostridium acetobutylicum [SP|P52046],
FadB1x (enoyl-CoA hydratase) from Pseudomonas putida
[GI:13310130]; contains Pfam profile PF00378 enoyl-CoA
hydratase/isomerase family protein
Length = 265
Score = 81.4 bits (192), Expect = 4e-16
Identities = 36/104 (34%), Positives = 62/104 (59%)
Frame = +3
Query: 249 VGLIQLNRPKALNALCKPLFVELGKAVNDFDADPTIAAIVLTGNEKAFAAGADIKEMQNN 428
+ +I +NRPK+LN+L + + V+L KA D D+D ++ ++ TG+ ++F +G D+ + +
Sbjct: 19 IAVITINRPKSLNSLTRAMMVDLAKAFKDMDSDESVQVVIFTGSGRSFCSGVDLTAAE-S 77
Query: 429 TYSDNTKQGFLREWEDISNCGKPIIAAVNGFALGGGCELAMLCD 560
+ + K + KPII A+NGFA+ G ELA+ CD
Sbjct: 78 VFKGDVKDPETDPVVQMERLRKPIIGAINGFAITAGFELALACD 121
>At5g43280.1 68418.m05290 enoyl-CoA hydratase/isomerase family
protein similar to Delta 3,5-delta2,4-dienoyl-CoA
isomerase, mitochondrial (ECH1) from Rattus norvegicus
[SP|Q62651], from Homo sapiens [SP|Q13011]; contains
Pfam profile PF00378 enoyl-CoA hydratase/isomerase
family protein
Length = 278
Score = 65.7 bits (153), Expect = 2e-11
Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 14/113 (12%)
Frame = +3
Query: 264 LNRPKALNALCKPLFVELGKAVNDFDADPTIAAIVLTGNEKAFAAGADIKEM-----QNN 428
+NRP LNAL F+E KA++ D +P ++ I+L+G K F +G D+ + Q++
Sbjct: 25 INRPSHLNALSLDFFIEFPKALSSLDQNPDVSVIILSGAGKHFCSGIDLNSLSSISTQSS 84
Query: 429 TYSD--NTKQGFLREWED-------ISNCGKPIIAAVNGFALGGGCELAMLCD 560
+ +D + + R+ + I C KP+IAA++G +GGG +L CD
Sbjct: 85 SGNDRGRSSEQLRRKIKSMQAAITAIEQCRKPVIAAIHGACIGGGVDLITACD 137
>At1g60550.1 68414.m06816 naphthoate synthase, putative /
dihydroxynaphthoic acid synthetase, putative / DHNA
synthetase, putative contains similarity to MENB from
Escherichia coli [SP|P27290], Bacillus subtilis
[SP|P23966]; contains Pfam profile PF00378 enoyl-CoA
hydratase/isomerase family protein
Length = 337
Score = 64.5 bits (150), Expect = 5e-11
Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Frame = +3
Query: 243 KNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADPTIAAIVLTGN-EKAFAAGADIKEM 419
+ + I +NRP+ NA EL +A ND D ++ I+LTG KAF +G D
Sbjct: 85 EGIAKITINRPERRNAFRPQTVKELMRAFNDARDDSSVGVIILTGKGTKAFCSGGDQALR 144
Query: 420 QNNTYSDNTKQGFLREWE---DISNCGKPIIAAVNGFALGGGCELAMLCD 560
+ Y+D G L + I KP+IA V G+A+GGG L M+CD
Sbjct: 145 TQDGYADPNDVGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHILHMVCD 194
>At2g30660.1 68415.m03739 3-hydroxyisobutyryl-coenzyme A hydrolase,
putative / CoA-thioester hydrolase, putative strong
similarity to gi:8572760; contains Pfam profile PF00388
enoyl-CoA hydratase/isomerase family protein
Length = 378
Score = 61.3 bits (142), Expect = 4e-10
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Frame = +3
Query: 240 KKNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADPTIAAIVLTGNEKAFAAGADIKEM 419
K +V ++ LNRPK LNALC + L + ++ DP++ ++L G +AF AG D+ +
Sbjct: 12 KSSVRILTLNRPKQLNALCFNMISRLLQLFRAYEEDPSVKLVILKGQGRAFCAGGDVPPV 71
Query: 420 QNNTYSDNTKQG--FLREWEDI----SNCGKPIIAAVNGFALGGGCELAM 551
N + G F R+ + + KP ++ +NG +G G +++
Sbjct: 72 VQNMVQGKWRLGADFFRDQYTLNYVMATYSKPQVSILNGIVMGAGAGVSI 121
>At5g65940.1 68418.m08301 3-hydroxyisobutyryl-coenzyme A hydrolase /
CoA-thioester hydrolase (CHY1) identical to gi:8572760;
contains Pfam profile PF00388 enoyl-CoA
hydratase/isomerase family protein
Length = 378
Score = 55.2 bits (127), Expect = 3e-08
Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Frame = +3
Query: 240 KKNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADPTIAAIVLTGNEKAFAAGADIKEM 419
K +V ++ LNRPK LNAL + L + F+ DP++ ++L G+ +AF AG D+ +
Sbjct: 16 KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAV 75
Query: 420 QNNTYSDNTKQG---FLREW---EDISNCGKPIIAAVNGFALGGGCELAM 551
+ N + G F E+ ++ K ++ +NG +GGG +++
Sbjct: 76 VRDINQGNWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGGAGVSV 125
>At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fatty
acid multifunctional protein (AIM1) identical to
gi:4337025; contains Pfam profiles PF02737
(3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
PF00378 (enoyl-CoA hydratase/isomerase family protein),
PF00725 (3-hydroxyacyl-CoA dehydrogenase)
Length = 721
Score = 55.2 bits (127), Expect = 3e-08
Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Frame = +3
Query: 249 VGLIQLNRPKALNALCKPLFVELGKAVNDFDADPTIAAIVLTGNEKAFAAGADIKEMQNN 428
V +I ++ P +N+L P+ L + D + + AIVL GN F+ G DI N
Sbjct: 16 VAVITISNPP-VNSLASPIISGLKEKFRDANQRNDVKAIVLIGNNGRFSGGFDI-----N 69
Query: 429 TYSDNTKQGFLREWEDIS---------NCGKPIIAAVNGFALGGGCELAMLC 557
+ K G L ++S + KP++AAV G ALGGG ELAM C
Sbjct: 70 VFQQVHKTGDLSLMPEVSVELVCNLMEDSRKPVVAAVEGLALGGGLELAMAC 121
>At2g30650.1 68415.m03738 3-hydroxyisobutyryl-coenzyme A hydrolase,
putative / CoA-thioester hydrolase, putative strong
similarity to gi:8572760; contains Pfam profile PF00388
enoyl-CoA hydratase/isomerase family protein
Length = 422
Score = 53.6 bits (123), Expect = 9e-08
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Frame = +3
Query: 240 KKNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADPTIAAIVLTGNEKAFAAGADIKEM 419
K +V ++ NRPK LNAL + L + ++ DP++ +VL G +AF+AG DI +
Sbjct: 56 KSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSAGGDIPPI 115
Query: 420 QNNTYSDNT-------KQGFLREWEDISNCGKPIIAAVNGFALGGGCELA 548
+ K G+ + +S KP ++ +NG +GGG L+
Sbjct: 116 VRDILQGKLIRGAHYFKVGYTLNYV-LSTYRKPQVSILNGIVMGGGAGLS 164
>At3g60510.1 68416.m06768 enoyl-CoA hydratase/isomerase family
protein similar to enoyl-CoA-hydratase, Avicennia
marina, EMBL:AF190450 [GI:6014701], CoA-thioester
hydrolase CHY1 from Arabidopsis thaliana [GI:8572760];
contains Pfam profile PF00378 enoyl-CoA
hydratase/isomerase family protein
Length = 401
Score = 53.2 bits (122), Expect = 1e-07
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Frame = +3
Query: 264 LNRPKALNALCKPLFVELGKAVNDFDADPTIAAIVLTGNEKAFAAGADI---KEMQNNTY 434
LNRP ALNAL + L K +++ DP I +++ G+ +AF AG DI ++
Sbjct: 52 LNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRTRGS 111
Query: 435 SDNTKQGFLREWEDISNCG---KPIIAAVNGFALGGG 536
D ++ F + I G KP +A +NG +GGG
Sbjct: 112 PDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGG 148
>At4g13360.1 68417.m02089 enoyl-CoA hydratase/isomerase family
protein similar to CoA-thioester hydrolase CHY1
(beta-hydroxyisobutyryl-CoA hydrolase) [Arabidopsis
thaliana] GI:8572760; contains Pfam profile PF00378:
enoyl-CoA hydratase/isomerase family protein
Length = 381
Score = 51.6 bits (118), Expect = 3e-07
Identities = 33/112 (29%), Positives = 62/112 (55%), Gaps = 8/112 (7%)
Frame = +3
Query: 237 FKKNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADPTIAAIVLTGN-EKAFAAGADIK 413
F V LI L+R KALNA+ + ++ ++++++DP + +++ G+ +AF AG DIK
Sbjct: 15 FPNGVALITLDRTKALNAMNLDMDIKYKSFLDEWESDPRVKCVIVEGSTSRAFCAGMDIK 74
Query: 414 ----EMQNNTYSDNTKQGFLREWE---DISNCGKPIIAAVNGFALGGGCELA 548
E+Q + + ++ F E+ I+ KP I+ ++G +G G L+
Sbjct: 75 GVAAEIQKDKNTPLVQKVFTAEYTLICAIAAYKKPYISLMDGITMGFGLGLS 126
>At3g24360.1 68416.m03058 enoyl-CoA hydratase/isomerase family
protein similar to CHY1 [gi:8572760]; contains Pfam
profile PF00388 enoyl-CoA hydratase/isomerase family
protein
Length = 418
Score = 51.2 bits (117), Expect = 5e-07
Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 8/112 (7%)
Frame = +3
Query: 237 FKKNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADPTIAAIVLTGN-EKAFAAGADIK 413
+ V LI L+RPKALNA+ + ++ +++++ DP + +V+ G+ +AF AG DIK
Sbjct: 52 YPNGVALITLDRPKALNAMNLEMDLKYKSLLDEWEYDPGVKCVVVEGSTSRAFCAGMDIK 111
Query: 414 EMQNNTYSD-NT---KQGFLREWE---DISNCGKPIIAAVNGFALGGGCELA 548
+ D NT ++ F E+ I+ KP I+ ++G +G G L+
Sbjct: 112 GVVAEILMDKNTSLVQKVFTAEYSLICKIAGYRKPYISLMDGITMGFGLGLS 163
>At4g31810.1 68417.m04521 enoyl-CoA hydratase/isomerase family
protein similar to CHY1 [gi:8572760]; contains Pfam
profile PF00388 enoyl-CoA hydratase/isomerase family
protein
Length = 409
Score = 48.8 bits (111), Expect = 2e-06
Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Frame = +3
Query: 264 LNRPKALNALCKPLFVELGKAVNDFDADPTIAAIVLTGNEKAFAAGADIKEMQNNTYSDN 443
LN P +LNAL P+ L + ++ +P I+ +++ G+ K F +GAD+ + ++ N
Sbjct: 56 LNNPSSLNALSAPMVGRLKRLYESWEENPAISFVLMKGSGKTFCSGADVLSLYHSINEGN 115
Query: 444 TKQG---FLREWEDISNCG---KPIIAAVNGFALGGG 536
T++ F ++ + G KP IA ++G +G G
Sbjct: 116 TEESKLFFENLYKFVYLQGTYLKPNIAIMDGVTMGCG 152
>At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family
protein similar to CHY1 [gi:8572760]; contains Pfam
profile PF00388 enoyl-CoA hydratase/isomerase family
protein
Length = 387
Score = 48.8 bits (111), Expect = 2e-06
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Frame = +3
Query: 231 GRFKKNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADPTIAAIVLTGNEKAFAAGADI 410
G K +V L LNRP+ LN + + +L + + ++ D I++ G +AF+AG D+
Sbjct: 15 GEEKGSVRLTTLNRPRQLNVISPEVVFKLAEYLELWEKDDQTKLILIKGTGRAFSAGGDL 74
Query: 411 KEMQNNTYS-DNTKQGFLREW---EDISNCGKPIIAAVNGFALGGGCEL 545
K + S D+ + R + I K ++ VNG ++GGG L
Sbjct: 75 KVFYHGQESKDSCLEVVYRMYWLCYHIHTYKKTQVSLVNGISMGGGAAL 123
>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
identical to fatty acid multifunctional protein (AtMFP2)
GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
acid beta-oxidation); contains Pfam profiles PF02737
(3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
PF00378 (enoyl-CoA hydratase/isomerase family protein),
PF00725 (3-hydroxyacyl-CoA dehydrogenase)
Length = 725
Score = 47.2 bits (107), Expect = 7e-06
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Frame = +3
Query: 249 VGLIQLNRPKALNALCKPLFVELGKAVNDFDADPTIAAIVLTGNEKAFAAGADIK---EM 419
V +I L P +N+L + L + + + AIV+TG + F+ G DI EM
Sbjct: 18 VAVITLINPP-VNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGEM 76
Query: 420 QNNTYSDNTKQGFLRE---WEDISNCGKPIIAAVNGFALGGGCELAMLC 557
Q + K G++ + + KP +AA++G ALGGG ELAM C
Sbjct: 77 QKGNVKE-PKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMAC 124
>At4g16800.1 68417.m02537 enoyl-CoA hydratase, putative similar to
AU-binding protein/Enoyl-CoA hydratase [Homo sapiens]
GI:780241, [Mus musculus]GI:6840920; contains Pfam
profile PF00378 enoyl-CoA hydratase/isomerase family
protein
Length = 229
Score = 43.6 bits (98), Expect = 9e-05
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 390 FAAGADIKEMQNNTYSD-NTKQGFLRE-WEDISNCGKPIIAAVNGFALGGGCELAMLCD 560
F AGAD+KE + + S+ +T LR + I P IAA+ G ALGGG E+A+ CD
Sbjct: 31 FCAGADLKERRTMSPSEVHTYVNSLRYMFSFIEALSIPTIAAIEGAALGGGLEMALACD 89
>At1g65520.1 68414.m07434 enoyl-CoA hydratase/isomerase family
protein low similarity to enoyl-CoA hydratase
[Escherichia coli] GI:2764828, carnitine racemase
SP|P31551 [Escherichia coli]; contains Pfam profile
PF00378 enoyl-CoA hydratase/isomerase family protein
Length = 240
Score = 39.1 bits (87), Expect = 0.002
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Frame = +3
Query: 303 LFVELGKAVNDFDADPTIAAIVL--TGNEKAFAAGADIKEMQNNTYSDNTKQGFLREW-E 473
L L +N +DP+ + VL T + K F+ G D+ ++N LR
Sbjct: 27 LLDSLRSTINQIRSDPSFSQSVLITTSDGKFFSNGYDLALAESNPSLSVVMDAKLRSLVA 86
Query: 474 DISNCGKPIIAAVNGFALGGGCELAMLCD 560
D+ + P IAAV G A GC LAM D
Sbjct: 87 DLISLPMPTIAAVTGHASAAGCILAMSHD 115
>At4g23490.1 68417.m03384 fringe-related protein + weak similarity
to Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 526
Score = 30.3 bits (65), Expect = 0.92
Identities = 12/50 (24%), Positives = 30/50 (60%)
Frame = -1
Query: 451 CFVLSLYVLFCISLISAPAAKAFSLPVSTIAAMVGSASKSLTALPSSTNS 302
CF++ Y+++ + L+S + S +T++A+ + S ++++L +S S
Sbjct: 42 CFIVFTYIIYMLKLVSTSRSCDDSTSFTTVSALSTNVSSNVSSLSTSLAS 91
>At3g54050.1 68416.m05976 fructose-1,6-bisphosphatase, putative /
D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative
/ FBPase, putative strong similarity to
fructose-1,6-bisphosphatase [Brassica napus] GI:289367;
identical to SP|P25851 Fructose-1,6-bisphosphatase,
chloroplast precursor (EC 3.1.3.11)
(D-fructose-1,6-bisphosphate 1-phosphohydrolase)
(FBPase) {Arabidopsis thaliana}; contains Pfam profile
PF00316: fructose-1,6-bisphosphatase
Length = 417
Score = 28.3 bits (60), Expect = 3.7
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Frame = +3
Query: 315 LGKAVNDFDADPTIAAIVLTGNEKAFAAGADIKEMQNNTYS--DNTKQGFLREWEDISNC 488
LGK V F DP VLT I Y D+ + ++ + +D
Sbjct: 262 LGKGVFSFTLDPMYGEFVLTQENIEIPKAGRIYSFNEGNYQMWDDKLKKYIDDLKDPGPT 321
Query: 489 GKPIIAAVNGFALG 530
GKP A G +G
Sbjct: 322 GKPYSARYIGSLVG 335
>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) identical
to HAC5 (GI:21105780) [Arabidopsis thaliana]; similar to
CREB-binding protein GB:S39162 from [Homo sapiens]
Length = 1670
Score = 27.5 bits (58), Expect = 6.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -2
Query: 483 WRCPPTRVRILVLYCH 436
W CPP + +LYCH
Sbjct: 1229 WACPPLKGEDYILYCH 1244
>At2g28360.1 68415.m03447 SIT4 phosphatase-associated family protein
contains Pfam profile: PF04499 SIT4
phosphatase-associated protein
Length = 826
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 406 ILRKCRIIHTVTIQNKDSYASGRTSPTVGSPSSLP 510
IL+ C +I + +KDS SG PTV + P
Sbjct: 454 ILQDCNLISKILSSDKDSALSGDNLPTVVATGKKP 488
>At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related protein 2
(PCAT2) contains Pfam domains PF02135: TAZ zinc finger
and PF00569: Zinc finger, ZZ type; identical to cDNA
p300/CBP acetyltransferase-related protein 2 GI:12597460
Length = 1691
Score = 27.5 bits (58), Expect = 6.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -2
Query: 483 WRCPPTRVRILVLYCH 436
W CPP + +LYCH
Sbjct: 1243 WACPPLKGEDYILYCH 1258
>At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc finger
(ZZ type) family protein contains Pfam profiles PF02135:
TAZ zinc finger, PF00569: Zinc finger, ZZ type
Length = 1706
Score = 27.5 bits (58), Expect = 6.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -2
Query: 483 WRCPPTRVRILVLYCH 436
W CPP + +LYCH
Sbjct: 1258 WACPPLKGEDYILYCH 1273
>At5g14770.1 68418.m01733 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 938
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 417 MQNNTYSDNTKQGFLREWEDISNCG-KPIIAAVNGFALGGGCE 542
M N+ +G L+ W+ + +CG KP + + N +G CE
Sbjct: 579 MMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCN-IVVGMLCE 620
>At2g40000.1 68415.m04915 expressed protein
Length = 435
Score = 27.1 bits (57), Expect = 8.6
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = -1
Query: 496 GFPQLE---MSSHSRKNPCFVLSLYVLFCISLISAPAAKAFSLPVSTIAAMVGSASKSLT 326
G P+L+ M ++RK C +++L + + A A F +AAM+GSA + T
Sbjct: 341 GGPRLQEAAMKLYARKTECD--KIHLLQGMQAVEAAAKSFFFGYRQLVAAMMGSAEMNAT 398
Query: 325 ALPSSTNS 302
A S +S
Sbjct: 399 ASQESCDS 406
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,409,029
Number of Sequences: 28952
Number of extensions: 249485
Number of successful extensions: 682
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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