Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I21
(448 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 170 1e-43
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 170 1e-43
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 29 0.25
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 27 0.99
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 25 4.0
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 25 5.3
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 5.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 24 9.3
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 170 bits (413), Expect = 1e-43
Identities = 74/135 (54%), Positives = 100/135 (74%)
Frame = +1
Query: 43 RRRFALSDIRCGKKRVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 222
++R A S ++CGK++VW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP +HSR R+RK
Sbjct: 7 QKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKT 66
Query: 223 TEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMK 402
A+R GRH G+GKR+GTA ARMP +W + KID+HLYH+LY++
Sbjct: 67 HAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLE 126
Query: 403 AKGNVFKNKRVLMEY 447
AKGN FK+KR L+E+
Sbjct: 127 AKGNTFKHKRALIEH 141
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 170 bits (413), Expect = 1e-43
Identities = 74/135 (54%), Positives = 100/135 (74%)
Frame = +1
Query: 43 RRRFALSDIRCGKKRVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 222
++R A S ++CGK++VW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP +HSR R+RK
Sbjct: 7 QKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKT 66
Query: 223 TEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMK 402
A+R GRH G+GKR+GTA ARMP +W + KID+HLYH+LY++
Sbjct: 67 HAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLE 126
Query: 403 AKGNVFKNKRVLMEY 447
AKGN FK+KR L+E+
Sbjct: 127 AKGNTFKHKRALIEH 141
>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.5 bits (63), Expect = 0.25
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 227 SVFLRTRAREWTATGFLMTRPSLIILRMFC 138
S F T REWT L T +++R FC
Sbjct: 85 STFWETMGREWTGIDILRTDKFYLLMRRFC 114
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 27.5 bits (58), Expect = 0.99
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 267 PLTKATVTSFP-ARLCVFANTSAGMDSNWFLDDQTILDHLTD 145
P A + SF +R CV N + NW+ + I HLTD
Sbjct: 121 PFQIARIISFEKSRPCVSTNLYDSVRLNWYFRPRDIQRHLTD 162
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 4.0
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -2
Query: 141 LSGISISDFIDLVGIKPHPLFTASYIRECKPSSVTLGNS 25
L ++S F DLV H + Y EC SS +LGNS
Sbjct: 588 LLSTAVSMFEDLVRYSSHLQY---YSEECSLSSESLGNS 623
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 5.3
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -2
Query: 288 SSISCTSPLTKATVTSFPARLCVFANTSAGMDSNWFLDDQTILDHLTDVLSGIS 127
S ISC SP+T TV SF A L + + G W + +L L S +S
Sbjct: 291 SIISCQSPITTLTV-SFDASLLI-SGDKDGNVLVWDSVSRQVLRRLVQYYSPVS 342
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 5.3
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 139 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 255
+++R +KD + +PV+V S A ++T G G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 24.2 bits (50), Expect = 9.3
Identities = 8/33 (24%), Positives = 20/33 (60%)
Frame = +1
Query: 127 TNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNT 225
T S ++ +IK+ +KP ++++++KN+
Sbjct: 912 TESLNQVKNLIKNDTSNRKPFGAENQSKLKKNS 944
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,451
Number of Sequences: 5004
Number of extensions: 34409
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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