Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I21
(448 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 178 1e-45
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 178 2e-45
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 31 0.32
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 31 0.32
01_06_1453 - 37465665-37466627 31 0.56
12_01_0476 + 3738526-3738567,3738695-3738739,3739240-3739601,373... 30 0.74
12_01_0890 + 8591718-8591720,8591809-8591919,8592001-8592525 29 1.3
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 29 1.7
01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416 29 2.3
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 28 3.0
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980... 28 3.9
08_02_0630 - 19483485-19483671,19483761-19484179,19485180-194854... 28 3.9
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942 28 3.9
01_05_0062 + 17755460-17755522,17756878-17756953,17757074-177571... 28 3.9
01_01_0826 + 6431621-6431917,6432356-6432505,6432614-6432796,643... 28 3.9
10_08_0781 + 20509033-20509714,20510048-20510191,20510604-205107... 27 5.2
05_06_0176 + 26161529-26161957 27 5.2
02_05_0521 - 29726985-29727605 27 5.2
09_04_0254 + 16131779-16132475,16132609-16132768,16132944-161329... 27 9.1
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 178 bits (434), Expect = 1e-45
Identities = 78/134 (58%), Positives = 99/134 (73%)
Frame = +1
Query: 43 RRRFALSDIRCGKKRVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 222
++R A S ++CGK +VWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR+R R+
Sbjct: 7 QKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSRARRA 66
Query: 223 TEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMK 402
EA++KGRH G+GKRRGT AR+P K LW AKKID+H+YH +YMK
Sbjct: 67 HEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMK 126
Query: 403 AKGNVFKNKRVLME 444
KGN+FKNKRVLME
Sbjct: 127 VKGNMFKNKRVLME 140
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 178 bits (433), Expect = 2e-45
Identities = 78/134 (58%), Positives = 99/134 (73%)
Frame = +1
Query: 43 RRRFALSDIRCGKKRVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 222
++R A S ++CGK +VWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR+R R+
Sbjct: 7 QKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSRARRA 66
Query: 223 TEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMK 402
EA++KGRH G+GKRRGT AR+P K LW AKKID+H+YH +YMK
Sbjct: 67 HEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMK 126
Query: 403 AKGNVFKNKRVLME 444
KGN+FKNKRVLME
Sbjct: 127 VKGNMFKNKRVLME 140
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 31.5 bits (68), Expect = 0.32
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +1
Query: 79 KKRVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRARVRKNTEARRKGRH 249
K W D E+N + + R + KM+ D LV+ +A H + T RKGR
Sbjct: 761 KGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRNDEETTSISRKGRA 818
Query: 250 CGFG 261
GFG
Sbjct: 819 QGFG 822
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 31.5 bits (68), Expect = 0.32
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +1
Query: 79 KKRVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRARVRKNTEARRKGRH 249
K W D E+N + + R + KM+ D LV+ +A H + T RKGR
Sbjct: 712 KGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRNDEETTSISRKGRA 769
Query: 250 CGFG 261
GFG
Sbjct: 770 QGFG 773
>01_06_1453 - 37465665-37466627
Length = 320
Score = 30.7 bits (66), Expect = 0.56
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = -2
Query: 294 WHSSISCTSPLTKATVTSFPARLCVFANTSAGMDSNWFLDDQTILDHL---TDVLSGISI 124
W S S P + AT T+ + LC A+ A + F DQ+ D L TDV S+
Sbjct: 206 WSSPASGNDPTSTAT-TATTSMLCTDASVQAALGELNFAMDQSCFDSLGLPTDVAGAGSL 264
Query: 123 SDFIDLV 103
S + +V
Sbjct: 265 SSWCSIV 271
>12_01_0476 +
3738526-3738567,3738695-3738739,3739240-3739601,
3739691-3740057,3740490-3740555,3741630-3741743
Length = 331
Score = 30.3 bits (65), Expect = 0.74
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 49 RFALSDIRCGKKRVWLDPNEINEIA--NTNSRQNIRKMIKDGLV 174
RFAL RC + LDPNEI ++ SR+ + +++ G++
Sbjct: 236 RFALHCRRCERDATPLDPNEIKHVSPYGITSREQVLEVVARGIL 279
>12_01_0890 + 8591718-8591720,8591809-8591919,8592001-8592525
Length = 212
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 8 VSPCQDEFPKVTEEGLHSL--IYDAVKRGCGLIPTRSMKSLILIPD 139
++P D+ K+ E+ H L D++ CG I TR + +LIPD
Sbjct: 65 LAPLSDDVKKILEDISHRLGSSLDSLVADCGSIRTRFKEIQLLIPD 110
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 29.1 bits (62), Expect = 1.7
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 109 INEIANTNSRQNIRKMIKDGLVIK-KPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 282
+ E N NS + + GL+ + KP+ V S RVR + K GK R TAN
Sbjct: 198 LGEANNDNSEKLEELFLDKGLLDELKPIRVESGKRVRASIRIIEKMMSSRVGKIRNTAN 256
>01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416
Length = 302
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 166 GLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTA 279
G+ +K+ H + + R+GRH G+G+RR +A
Sbjct: 212 GITLKEDEKQHGTSSSAADGGGLRRGRHDGWGRRRSSA 249
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +1
Query: 73 CGKKRVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRK 240
C RV+ D + N +NIRK + ++++ P+A + NT RK
Sbjct: 118 CFAARVYCDGCHCSPCGNKIENENIRKEAIETILLRNPLAFQPKIENSPNTVTVRK 173
>10_06_0028 -
9802362-9802475,9802919-9803090,9803167-9803208,
9803344-9804011,9804098-9804418,9804495-9804833,
9804856-9805109,9805300-9805510
Length = 706
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 94 LDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVH 198
LDP +NE N R NI IKD L ++ +H
Sbjct: 628 LDPAVVNETTLKNDRANIVDYIKDCLFARQRQGLH 662
>08_02_0630 -
19483485-19483671,19483761-19484179,19485180-19485413,
19485714-19485851
Length = 325
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 200 PALVFAKTQRRAGKDVTVALVRGEV 274
P LVF KT G V VAL+ G+V
Sbjct: 70 PVLVFPKTSTDGGSSVIVALLPGDV 94
>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
Length = 379
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +1
Query: 160 KDGLVIKKPVAVHSRARVRKNTEARRKGRHC---GFGKRRGTANAR 288
KDG ++ + +RA R +T+A R+ HC G+G RR + R
Sbjct: 174 KDGRNLQAGAQLCARAASRGHTDALRELGHCVSDGYGVRRSLSGGR 219
>01_05_0062 +
17755460-17755522,17756878-17756953,17757074-17757145,
17757274-17757361,17757793-17758033,17759461-17759576,
17759804-17760021,17760210-17760241,17760338-17760440,
17760531-17760805
Length = 427
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -2
Query: 114 IDLVGIKPHPLFTASYIRECKPSSVTLG--NSSWH 16
ID VGI +TA Y+R+ +P++ TL +S WH
Sbjct: 256 IDYVGINQ---YTAYYVRDQQPNATTLPSYSSDWH 287
>01_01_0826 +
6431621-6431917,6432356-6432505,6432614-6432796,
6433305-6433385,6433548-6433586,6433646-6433849,
6433933-6434073,6434270-6434437,6434498-6434518
Length = 427
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 227 RRAGKDVTVALVRGEVQLMLECHKKN 304
RRAG +VTVA V ++Q++ HK N
Sbjct: 272 RRAGANVTVASVEDKLQVVTRRHKFN 297
>10_08_0781 +
20509033-20509714,20510048-20510191,20510604-20510719,
20511356-20511520,20511822-20512043,20512613-20512735
Length = 483
Score = 27.5 bits (58), Expect = 5.2
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 91 WLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGK 264
++D N+ + + +SR ++ ++ GL +K PV + VR E GR G G+
Sbjct: 29 YVDGNDTEDCYSGSSRASLAGALRQGLNLKSPVLGYKTPNVR---ELYTLGRELGQGQ 83
>05_06_0176 + 26161529-26161957
Length = 142
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 79 KKRVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEA 231
+ R W + + N + +KM+ +G+++ P A+ R R+R T A
Sbjct: 60 RSRSWASEYNMFDQTNDDDDAVKKKMMNNGVMVAPPHAIVDRRRLRGRTAA 110
>02_05_0521 - 29726985-29727605
Length = 206
Score = 27.5 bits (58), Expect = 5.2
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 136 RQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRK-GRHCGFGKRRGTANARM-PQKELW 309
R +R M++ GL + +AV A R + EARR+ R +RRG A + P W
Sbjct: 54 RAAVRGMVRGGLAPRARLAVLRAAAFRDSREARRRIRRDRRRRRRRGMMVAALSPNHAFW 113
>09_04_0254 +
16131779-16132475,16132609-16132768,16132944-16132992,
16133158-16133271,16133434-16133958,16135538-16135969,
16138882-16138956,16139530-16139625,16140610-16140725,
16140822-16140992,16141080-16141239,16141328-16141513,
16141624-16141752,16141837-16141915,16142034-16142143
Length = 1032
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 205 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELW 309
AR + + +++GR G+G R+ A R+ +E W
Sbjct: 396 ARGGQQQQQQQEGRRGGWGVRKAAARVRVAAEENW 430
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,589,228
Number of Sequences: 37544
Number of extensions: 248619
Number of successful extensions: 749
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -