Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I21
         (448 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              201   2e-52
SB_27800| Best HMM Match : CAP_GLY (HMM E-Value=2.5e-39)               31   0.43 
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0)                     29   2.3  
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)           28   4.0  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    28   4.0  
SB_52450| Best HMM Match : DUF1222 (HMM E-Value=0)                     27   7.1  
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   9.3  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  201 bits (491), Expect = 2e-52
 Identities = 92/135 (68%), Positives = 105/135 (77%)
 Frame = +1

Query: 43  RRRFALSDIRCGKKRVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 222
           ++R A S ++CGKK++WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  VHSRARVRK 
Sbjct: 35  QKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIVHSRARVRKA 94

Query: 223 TEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMK 402
            EAR KGRH G GKR+GTANARMPQK +W                AKKID H+YHSLYMK
Sbjct: 95  DEARSKGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHSLYMK 154

Query: 403 AKGNVFKNKRVLMEY 447
           +KGNVFKNKRVLMEY
Sbjct: 155 SKGNVFKNKRVLMEY 169


>SB_27800| Best HMM Match : CAP_GLY (HMM E-Value=2.5e-39)
          Length = 246

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = +2

Query: 221 TQRRAGKDVTVALVRGEVQLMLECHKKN 304
           +++R GKD+T+A ++G+++L+  C   N
Sbjct: 23  SEKRYGKDITIAALKGKLELITGCSSAN 50


>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 202 RARVRKNTEARRKGRHCGFGKRRGTANAR 288
           +A  RK    RR+ R  G  K+R TANAR
Sbjct: 17  KANSRKKRRRRRRPRLTGLSKQRQTANAR 45


>SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 577

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = -2

Query: 231 RLCVFANTSAGMDSNWFLD----DQTILDHLTDVL 139
           ++CV A  SA  D+ W +     +QTI +HL DVL
Sbjct: 252 QMCVQAINSANSDARWLVQSLCCNQTIDEHLIDVL 286


>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
          Length = 1806

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 8    VSPCQDEFPKVTEEGLHSLIYDAV 79
            ++PC D FP   +E L S+++ A+
Sbjct: 1767 LAPCDDSFPSSNQEDLSSVLFSAM 1790


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
 Frame = +1

Query: 67  IRCGKKRVWLDPNEINE--IANTNSRQ---NIRKM------IKDGLVIKKPVAVHSRARV 213
           IR G+KR+ + P +  +  +   N+R+   N+RK+      ++  LV ++P+    R R 
Sbjct: 431 IRSGEKRIVIHPRKDKKRFLVRVNNRRKPFNLRKIPPNLSGLRRFLVRRRPIRRQRRRRR 490

Query: 214 RKNTEARRKGRHCGFGKRRGTANAR 288
           R+    RR+ R     +RR     R
Sbjct: 491 RRRRRRRRQRRRRRRRRRRNRRKRR 515


>SB_52450| Best HMM Match : DUF1222 (HMM E-Value=0)
          Length = 640

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +3

Query: 159 QGWSGHQETSCCPFPRSCSQKHRGAQERT 245
           QG +G     C P PR C    RG Q  T
Sbjct: 173 QGGAGPYPGGCRPIPRGCRPIPRGVQAHT 201


>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2639

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -2

Query: 168  TILDHLTDVLSGISISDFIDLVGI-KPHPLFTASYIRECKPSSVTLGNSSW 19
            +I +H   ++ G+ +S  I    I K      A Y R  KP++ T+G   W
Sbjct: 1416 SIAEHRARIVQGVELSQRIAHSLIQKAQQKMKAQYDRTSKPATFTVGQRVW 1466


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,421,641
Number of Sequences: 59808
Number of extensions: 281617
Number of successful extensions: 733
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)