Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_I21
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   180   3e-46
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.29 
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP ...    28   2.7  
AF078789-1|AAK21515.1|  392|Caenorhabditis elegans Hypothetical ...    28   2.7  
AL132943-5|CAB81977.1|  367|Caenorhabditis elegans Hypothetical ...    28   3.6  
Z68320-4|CAA92705.4|  448|Caenorhabditis elegans Hypothetical pr...    27   4.7  
AL008881-4|CAH10844.2|  448|Caenorhabditis elegans Hypothetical ...    27   4.7  
AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical ...    27   6.2  
AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical ...    27   6.2  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  180 bits (439), Expect = 3e-46
 Identities = 79/135 (58%), Positives = 102/135 (75%)
 Frame = +1

Query: 43  RRRFALSDIRCGKKRVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 222
           ++R A + ++CGK RVWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR R R+ 
Sbjct: 7   QKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFRAREY 66

Query: 223 TEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMK 402
            EARRKGRH G+GKRRGTANARMP+K LW                AKK+D+HLYH LY++
Sbjct: 67  EEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLR 126

Query: 403 AKGNVFKNKRVLMEY 447
           AKGN FKNK+ L+EY
Sbjct: 127 AKGNNFKNKKNLIEY 141


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 121  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 255
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 133 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 246
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical protein
            ZK512.3 protein.
          Length = 1418

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 234  ARLCVFANTSAGMDSNWFLDDQTILDHLTDVLSGISISD 118
            A+  V  ++   + + W L++ +  +HLT +L  I ISD
Sbjct: 1282 AKCQVLVDSQKNIPNEWHLENSSKDEHLTSILKMIGISD 1320


>AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP
            homologous cationchannel protein protein.
          Length = 1027

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 234  ARLCVFANTSAGMDSNWFLDDQTILDHLTDVLSGISISD 118
            A+  V  ++   + + W L++ +  +HLT +L  I ISD
Sbjct: 891  AKCQVLVDSQKNIPNEWHLENSSKDEHLTSILKMIGISD 929


>AF078789-1|AAK21515.1|  392|Caenorhabditis elegans Hypothetical
           protein Y44E3B.2 protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 415 HYPSPSCTRNGRDACLSSSLFC 350
           +YP P+CTR   D C S  LFC
Sbjct: 306 YYPRPTCTRENPD-CDSPYLFC 326


>AL132943-5|CAB81977.1|  367|Caenorhabditis elegans Hypothetical
           protein Y116F11B.8 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -2

Query: 333 TEHPLPLNP*FFLWHSSISCTSPLTKATVTSFPARLCVFANTSAGMDSNWFLDDQT 166
           TE    L P    W+S  + +   T ATVTS       F++    +DS+   D  T
Sbjct: 238 TEPASTLGPVVIPWNSPGTSSKATTSATVTSLVLGPTTFSSAPQALDSSLAADPST 293


>Z68320-4|CAA92705.4|  448|Caenorhabditis elegans Hypothetical
           protein W07A12.4 protein.
          Length = 448

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 237 PARLCVFANTSAGMDSNWFLDDQTILDHLTDVLSGISISDFIDLVGIKPHP 85
           P RL +  N  AG D  WF DD+  L  +    +    SD    VG + +P
Sbjct: 9   PNRLVIEENDPAGSD--WFGDDRETLCDMAKFYNNAQFSDVNMKVGEESYP 57


>AL008881-4|CAH10844.2|  448|Caenorhabditis elegans Hypothetical
           protein W07A12.4 protein.
          Length = 448

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 237 PARLCVFANTSAGMDSNWFLDDQTILDHLTDVLSGISISDFIDLVGIKPHP 85
           P RL +  N  AG D  WF DD+  L  +    +    SD    VG + +P
Sbjct: 9   PNRLVIEENDPAGSD--WFGDDRETLCDMAKFYNNAQFSDVNMKVGEESYP 57


>AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6b protein.
          Length = 547

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -3

Query: 245 RPFLRASVFLRTRAREWTATGFLMTRPSLIILRMFCLELVLAI 117
           RP   AS F + RA  W A+  ++  P+L+ ++ F   +++AI
Sbjct: 262 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTF-QSIIIAI 303


>AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6a protein.
          Length = 684

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -3

Query: 245 RPFLRASVFLRTRAREWTATGFLMTRPSLIILRMFCLELVLAI 117
           RP   AS F + RA  W A+  ++  P+L+ ++ F   +++AI
Sbjct: 399 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTF-QSIIIAI 440


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,391,744
Number of Sequences: 27780
Number of extensions: 202906
Number of successful extensions: 614
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)