Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_I21
(448 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 173 5e-44
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 171 1e-43
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 167 2e-42
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 40 0.001
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 2.5
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 27 4.4
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 27 4.4
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 27 4.4
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR... 27 5.8
At3g09780.1 68416.m01161 protein kinase family protein contains ... 27 5.8
At2g44090.1 68415.m05483 expressed protein 27 5.8
At4g34020.1 68417.m04827 DJ-1 family protein similar to CAP1 [Ra... 27 7.6
At3g59910.1 68416.m06686 expressed protein 27 7.6
At2g35210.2 68415.m04318 human Rev interacting-like family prote... 27 7.6
At2g35210.1 68415.m04319 human Rev interacting-like family prote... 27 7.6
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 173 bits (421), Expect = 5e-44
Identities = 76/134 (56%), Positives = 96/134 (71%)
Frame = +1
Query: 43 RRRFALSDIRCGKKRVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 222
++R A S ++CGK +VWLDPNE +I+ NSRQNIRK++KDG +I+KP +HSR+R R
Sbjct: 7 QKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARAL 66
Query: 223 TEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMK 402
EA+RKGRH G+GKR+GT AR+P K LW +KKIDRH+YH +YMK
Sbjct: 67 NEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMK 126
Query: 403 AKGNVFKNKRVLME 444
KGNVFKNKRVLME
Sbjct: 127 VKGNVFKNKRVLME 140
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 171 bits (417), Expect = 1e-43
Identities = 75/134 (55%), Positives = 97/134 (72%)
Frame = +1
Query: 43 RRRFALSDIRCGKKRVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 222
++R A S ++CGK++VWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR+R R+
Sbjct: 7 QKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQL 66
Query: 223 TEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMK 402
A+RKGRH G+GKR+GT AR+P K LW KKIDRH+YH +YMK
Sbjct: 67 NIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMK 126
Query: 403 AKGNVFKNKRVLME 444
KGNVFKNKRVLME
Sbjct: 127 VKGNVFKNKRVLME 140
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 167 bits (407), Expect = 2e-42
Identities = 73/134 (54%), Positives = 95/134 (70%)
Frame = +1
Query: 43 RRRFALSDIRCGKKRVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 222
++R A S ++CGK +VWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR+R RK
Sbjct: 7 QKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKM 66
Query: 223 TEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMK 402
A+ KGRH G+GKR+GT AR+P K LW KKID+H+YH +YM+
Sbjct: 67 KIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMR 126
Query: 403 AKGNVFKNKRVLME 444
KGNVFKNKRVLME
Sbjct: 127 VKGNVFKNKRVLME 140
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/29 (62%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = +1
Query: 361 KKIDRHLY-HSLYMKAKGNVFKNKRVLME 444
KKID+ +Y H ++MK KG V+KNK VLME
Sbjct: 29 KKIDKLVYYHDMFMKVKGKVYKNKCVLME 57
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 163 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 282
D + KK + + + ++RKN + RR+G G G RR A+
Sbjct: 77 DVIYWKKLLELENSGKIRKNPKPRRRGDKSGDGFRRTGAD 116
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 199 SRARVRKNTEARRKGRHCGFGKRRGTANARMPQKEL 306
SR+R R + +R +GR + R + ++ P+K+L
Sbjct: 209 SRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDL 244
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 358 AKKIDRHLYHSLYMKAKGNVFKNKRVL 438
A K+++ +Y Y KAKG + KN+RVL
Sbjct: 870 AGKVEK-IYDLAYEKAKGMLLKNRRVL 895
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 163 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGT 276
D L++ H R+ VR+ R +GR G G RRG+
Sbjct: 816 DELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGS 853
>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1210
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 153 LTDVLSGISISDFIDLVGIKPH 88
++DVLS DF D VGI+PH
Sbjct: 219 VSDVLSYTPSRDFDDYVGIRPH 240
>At3g09780.1 68416.m01161 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 775
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 448 CTP*GHACS*THYPSPSCTRNGRDACLSSSL 356
C+P G CS + S SCT N C SL
Sbjct: 381 CSPCGSDCSHGFFLSSSCTANSDRICTPCSL 411
>At2g44090.1 68415.m05483 expressed protein
Length = 582
Score = 27.1 bits (57), Expect = 5.8
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -2
Query: 198 MDSNWFLDDQTILDHLTDVLSGISISDFIDLVGIKPHPLFTASYIRECKPSSVTLGNS 25
+DS WFL + L +T++++ I D F AS + C +V+L ++
Sbjct: 104 LDSIWFLSTEHELRGITELIAKIICHGAQDYTRATLRTSFLASCVSSCHSRTVSLADT 161
>At4g34020.1 68417.m04827 DJ-1 family protein similar to CAP1
[Rattus norvegicus] GI:3250916, ThiJ protein,
Escherichia coli, PIR:H64771; contains Pfam profile
PF01965 ThiJ/PfpI family
Length = 472
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 197 IPALVFAKTQRRAGKDVTVALVRGEVQL 280
I A+V RRAG DVTVA V ++++
Sbjct: 97 IEAVVLVDVLRRAGADVTVASVEQKLEV 124
>At3g59910.1 68416.m06686 expressed protein
Length = 611
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = -2
Query: 201 GMDSNWFLDDQTILDHLTDVLSGISISDFIDLVGIKPHPLFTASYIRECKPSSVTLGNS 25
G+DS WFL + +T ++ I D F AS + C+ +++L ++
Sbjct: 137 GLDSVWFLSTKPEFQGITGLIKKIICHGAHDFTRATLRTSFLASCVSACQSRTMSLSDT 195
>At2g35210.2 68415.m04318 human Rev interacting-like family protein
/ hRIP family protein similar to ARFGAP1 protein
GI:7211442 from [Homo sapiens]; contains InterPro
accession IPR001164: Human Rev interacting-like protein
(hRIP)
Length = 371
Score = 26.6 bits (56), Expect = 7.6
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +1
Query: 37 SYRRRFALSDIRCGKKRVWLDPNEINEIANTNSRQNIRKMIK--DGLVIKKPVAVHSRAR 210
S+ RF +D + ++ P ++ +A S + ++ G KKP+ S+ +
Sbjct: 233 SFSSRFDYAD-NVQNREDYMSPQVVSHVAPPKSSGFFEEELEMNGGRFQKKPITSSSKLQ 291
Query: 211 VRKNTEARRK 240
+++ EAR+K
Sbjct: 292 IQETDEARKK 301
>At2g35210.1 68415.m04319 human Rev interacting-like family protein
/ hRIP family protein similar to ARFGAP1 protein
GI:7211442 from [Homo sapiens]; contains InterPro
accession IPR001164: Human Rev interacting-like protein
(hRIP)
Length = 395
Score = 26.6 bits (56), Expect = 7.6
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +1
Query: 37 SYRRRFALSDIRCGKKRVWLDPNEINEIANTNSRQNIRKMIK--DGLVIKKPVAVHSRAR 210
S+ RF +D + ++ P ++ +A S + ++ G KKP+ S+ +
Sbjct: 233 SFSSRFDYAD-NVQNREDYMSPQVVSHVAPPKSSGFFEEELEMNGGRFQKKPITSSSKLQ 291
Query: 211 VRKNTEARRK 240
+++ EAR+K
Sbjct: 292 IQETDEARKK 301
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,964,937
Number of Sequences: 28952
Number of extensions: 192568
Number of successful extensions: 567
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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